Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq1990 612 2e-170 >seq1990 Length=122890 Score = 612 bits (678), Expect = 2e-170 Identities = 738/998 (74%), Gaps = 12/998 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || || || ||||| || |||||| || ||| | ||| | || ||||| ||||| ||| Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 ||||| || ||| ||||||| || || || ||| | || ||||| || |||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTCTGTATTTATTATTGCTTTCATTGCAGCTCCT 54113 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 72413 || || ||||| || || ||| | || || ||| | |||||| ||||| || || ||||| Sbjct 54112 CCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTT-TACGGAAACAA 54054 Query 72414 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 72473 ||||||||||| |||| | | || |||| || || || || |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 72474 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTAT 72533 |||||||| || | | || || ||| | || ||||| ||||||||| ||||| | | Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 72534 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | | |||||| | |||| | || |||||||||| | |||||||||| ||| | Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACCG 53874 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 |||| ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 53873 TTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGC 53814 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 || ||| | | || ||| | ||||| || |||||||| |||||||| |||| || Sbjct 53813 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAAT 53754 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||| ||||| |||||||||||| | ||||||||||| ||||||||||| || |||||||| Sbjct 53753 CTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCC 53694 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 ||||| ||| |||||||| ||| | |||||||| ||| |||||||| ||||| || Sbjct 53693 ATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGG 53634 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGG 72893 ||| | || |||||| | ||||| | || || || ||||| ||| | ||| || Sbjct 53633 TTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGG 53574 Query 72894 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 72953 || ||||| || ||||| |||||||| || ||||| || |||||||| || ||||| || Sbjct 53573 TTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGG 53514 Query 72954 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 73013 ||||||||| ||||| || || || |||||||||||||| |||||||||||| | || Sbjct 53513 TAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGC 53454 Query 73014 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAA 73073 || | |||||||| || | ||||| || || | |||||| | || ||||| ||||| Sbjct 53453 TGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAA 53394 Query 73074 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTG---TACC 73130 | | ||||| ||||||||||||||||| ||||| || || | ||| | | || Sbjct 53393 CTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGA--CA---GTCAAGGTCGTGTTATT 53339 Query 73131 AACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGA 73188 |||| |||| || | | ||| | || |||||||| |||||||||||||||||| | Sbjct 53338 AACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 53279 Query 73189 AATGCACACAACTTCCCACTAGACCTAGCATCTGCTGA 73226 || || ||||||||||| |||||| |||| |||| ||| Sbjct 53278 AACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 408 bits (452), Expect = 5e-109 Identities = 708/1027 (69%), Gaps = 23/1027 (2%) Strand=Plus/Minus Query 73376 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 73435 ||||| ||| ||| ||||| ||||| ||||| | || ||||||||||| |||||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 73436 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 73495 || || ||||| | | | || || ||||| ||| || ||||| || || |||||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 73496 TACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTAACTGCAGCAGTA 73555 || || ||||| | || ||| ||| | || || |||||| ||||||| || || Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 73556 TCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGACCAGAGGCACAA 73615 || || |||| | || | | | ||| |||| | | ||||| ||||| |||||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 73616 GGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTAGCATTACATGGA 73675 |||||| | || |||| ||||||||| || ||||||| || || || | |||||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 73676 GTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGACTTGTTGGGATA 73735 | |||| | ||||| || ||| | | || |||||| |||| || || || Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTACAATTA 44093 Query 73736 CGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACGAGCATCTTTCTA 73795 |||||||| |||||| | |||||||| | || || || || | ||| || Sbjct 44092 CGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTTTTA 44033 Query 73796 ATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 73855 || || || | || || ||||||| || |||||| || ||||| |||||||| Sbjct 44032 ATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCAATT 43973 Query 73856 TTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCATATG 73915 || || | ||||||||| | || |||||||| || ||| | || |||||||||||| Sbjct 43972 TTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCATATG 43913 Query 73916 ATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAACAGTA 73975 ||||| || || || | | || | || | ||||||| || ||||||||||| ||| Sbjct 43912 ATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACTGTA 43853 Query 73976 CAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATTCAATCTACAACT 74035 | || || || | |||||| ||| ||| ||| |||| Sbjct 43852 GAAAATACTTTATTTGAAGATGG------------TGATGGTG-----CAAA-TACA--- 43814 Query 74036 TTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATTACTGCTAACAGA 74095 ||| | || || | || || || ||||| |||||| |||| |||| |||||| | Sbjct 43813 TTCCGTGCGTTTAACCCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGT 43754 Query 74096 TTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATG 74155 |||||||| || || || ||| | |||||||| |||||| | | || || ||| ||||| Sbjct 43753 TTCTGGTCTCAAATCTTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATG 43694 Query 74156 TTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCACTT 74215 | || ||||| || | ||| | |||| |||| || | || ||| |||| || Sbjct 43693 CTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCT-TT 43635 Query 74216 AACCTTA-GAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTT 74274 || ||| |||| || || ||||| ||||| || || | ||||| |||||||| || || Sbjct 43634 AAATTTACGAGCTTATGATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATT 43575 Query 74275 TGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATC 74334 |||||| || |||||||| || |||||||| ||||||||||| | || |||||| || | Sbjct 43574 TGAAACTTTTTACACTAAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGC 43515 Query 74335 TGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGC 74394 | ||||| || ||||| || |||| |||||||| || || | ||||| || ||||| Sbjct 43514 TCAAGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGC 43455 Query 74395 ACTATAA 74401 || ||| Sbjct 43454 TCTTTAA 43448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572859349769200