Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1886 98.7 1e-14 seq1794 96.9 4e-14 >seq1886 Length=1372085 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/175 (73%), Gaps = 8/175 (5%) Strand=Plus/Minus Query 869194 GATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGAT 869253 ||| | ||||||| ||| | || || ||||| || || | |||||||||||||||||| Sbjct 694611 GATGAGTTCGTTGGAAAACGTAAGCCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGAT 694552 Query 869254 GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGC-AAAGCCGATGAGCCGCT 869312 |||||| ||||| || || || || || ||||||||| ||| |||||| | || | || Sbjct 694551 GGCGCAAAAACTCCCTGAAAAGAAAATCCCCTCGACGCAGGCGAAAGCC-AGGATTCTCT 694493 Query 869313 CGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTT 869367 | |||||| | || | ||| |||||| || | |||||||| ||||| Sbjct 694492 CTGCAAAGCT------CCCAGCACTGTCGATCCATTTTAGAGCCCAGTCAGCCTT 694444 >seq1794 Length=856596 Score = 96.9 bits (106), Expect = 4e-14 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||| | || || || || || |||| || |||||||| || || ||||| | | Sbjct 303875 TCCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAA 303816 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 | || ||||| |||| || ||||| |||||||||||||| ||| || || ||||||| Sbjct 303815 GATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCT 303756 Query 1628585 TGCGCTTGCCGCCGCC 1628600 | | ||||||||| || Sbjct 303755 TCCTCTTGCCGCCACC 303740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106975891280830