Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1917 100 2e-16 seq1943 98.7 8e-16 seq1762 87.8 1e-12 seq1957 86.0 5e-12 seq1660 86.0 5e-12 seq1814 82.4 6e-11 >seq1917 Length=1730829 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| ||||| || || || || || || || || ||| | || |||| || Sbjct 507902 ATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 507961 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| | || | | | ||| || ||||||| ||||| |||||| | || ||| Sbjct 507962 GACACGATTGACAAC--GTTAAGAC-GAAGATTCAAGACAAGGAAGGCATTCCTCCCGAT 508018 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||||| ||||||| || || ||||| ||||||||| | || |||| || ||| Sbjct 508019 CAGCAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTAC 508078 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||||||||| || ||||| | || || || ||||||| || Sbjct 508079 AACATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGG 508128 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||||| || || || ||||| ||| | || ||| | Sbjct 507446 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 507505 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || ||| |||||| ||||| || ||| | || ||| || Sbjct 507506 GACACTATCGACAACGTCAAAGCCAAGATTCAAGACAAGGAGGGCATACCGCCGGACCAG 507565 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||| || || ||| |||| |||| | || |||| ||||||||| Sbjct 507566 CAAAGGCTCATCTTTGCAGGGAAGCAGTTGGAAGATGGTCGCACTTTGGCCGATTACAAC 507625 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || || || |||||| ||||| Sbjct 507626 ATCCAGAAGGAGTCCACCTTGCACTTGGTG 507655 >seq1943 Length=2190071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||||||||| |||||||| | || || || || ||||| | ||| ||| || | Sbjct 1469844 ATGCAAATATTCGTCAAAACGCTGACGGGGAAGACGATTACGTTGGAAGTTGAGAGCTCA 1469903 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || || ||||||| ||||||||||| | || || || Sbjct 1469904 -GATACTATTGATAACGTTAAGACGAAGATTCAAGACAAAGAAGGTATTCCACCTGACCA 1469962 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || | |||| ||| || || ||| ||||||||| | || |||| |||||||| Sbjct 1469963 GCAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGGCGTACTCTGGCCGATTACAA 1470022 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 |||||| || || || ||| | ||| ||||||| Sbjct 1470023 CATTCAGAAGGAGTCCACGCTTCACCTGGTGTT 1470055 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| || || || || || || || || || | ||| ||| | Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||||||||| | ||| |||||| Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||||||| | ||| || || || ||||| |||| | || |||| ||||||||| Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAAC 1470251 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || || || || ||||| |||| Sbjct 1470252 ATTCAGAAGGAGTCCACCCTGCACTTGGT 1470280 >seq1762 Length=742324 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 |||||||| ||||| || || || || ||||| || || || | || || |||| | Sbjct 519199 ATGCAAATCTTTGTGAAGACGTTGACGGGCAAGACAATCACGTTGGAGGTCGAGAGCTCG 519258 Query 110331 ACGATACTGTCGGCCAGGTAAA-ACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||||| ||| | | || || ||| |||||| ||||| ||||| | || ||| Sbjct 519259 --GATACAATCGACAACGTGAAGACA-AAGATTCAAGACAAGGAAGGTATTCCTCCCGAT 519315 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || | || | || || || ||| ||||||||| |||| | ||||||||| Sbjct 519316 CAGCAGCGATTGATCTTCGCTGGGAAGCAGTTGGAGGATGGGCGAACTCTCGCGGATTAC 519375 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || || ||||| |||||| | ||||| | ||| |||| || Sbjct 519376 AATATTCAGAAGGAGTCTACCTTGCACCTTGTGTTGCGGCTGAGAGGAGG 519425 >seq1957 Length=2436183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||| || |||| ||| | | Sbjct 68758 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 68817 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || ||||||| ||||| || ||| | || || || Sbjct 68818 GACACTATCGACAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 68877 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||||| | | || | || || |||||| Sbjct 68878 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCCGACTACAAC 68937 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| |||||| ||||| | | ||||| || || Sbjct 68938 ATCCAGAAGGAGTCTACCTTGCACTTGGTGCTCCGTCTGCGGGGCGG 68984 >seq1660 Length=444603 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | || ||||| ||||| || |||| ||| | | Sbjct 434692 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 434633 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| ||| | | || || ||||||| ||||| || ||| | || || || Sbjct 434632 GACACTATCGACAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 434573 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | || || || ||||||||||||| | | || | || || |||||| Sbjct 434572 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCCGACTACAAC 434513 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || ||||| |||||| ||||| | | ||||| || || Sbjct 434512 ATCCAGAAGGAGTCTACCTTGCACTTGGTGCTCCGTCTGCGGGGCGG 434466 >seq1814 Length=924488 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 || || ||||| || ||||| || || || || || || ||||| ||| |||| |||| Sbjct 462402 TTCAAGATGCAGATCTTTGTAAAGACCTTGACTGGGAAGACCATCACCCTCGAGGTGGAG 462461 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 |||||| ||| | || || |||||| || || || || | || Sbjct 462462 AGCTCCGATACAATCGATAACGTGAAGACGAAGATCCAGGATAAGGAGGGGATTCCTCCT 462521 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || || || | || | |||||| || || ||||||| | ||||| |||||||| Sbjct 462522 GACCAGCAGAGGTTGATCTTTGCGGGCAAGCAATTGGAGGACGGTAGAACGCTGGCGGAT 462581 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || || || |||||| ||||| | || |||| || || Sbjct 462582 TACAACATACAGAAGGAGTCCACCTTGCACTTGGTGCTTAGGTTGCGGGGAGG 462634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412831587301070