Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq1933 109 9e-18 seq1794 107 3e-17 seq1733 95.1 2e-13 seq1774 91.5 2e-12 seq1891 87.8 3e-11 >seq1933 Length=1930184 Score = 109 bits (120), Expect = 9e-18 Identities = 162/225 (72%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 || || ||||||||||||||||| || || |||||| | |||| || ||| ||| |||| Sbjct 1648958 TTCGTCACGGCCTTGGTACCCTCCGACACCGCGTGCTTAGCCAACTCCCCGGGCAGGATC 1649017 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGG-TGCCGATCGTGTTGCGCTTGTTAGTG---CG 1485590 ||||| || |||||||| |||||||||| || | || || |||| ||| || | Sbjct 1649018 AGGCGAACTGCGGTCTGAATCTCGCGGGATG----TAATGGTGGGCTTCTTATTGTACCT 1649073 Query 1485591 CGCCAGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || ||| | ||||| ||| | || |||| ||||| |||| || ||||||| Sbjct 1649074 CGCAAGACGGGCAGCCTC-CTGCGCAAGCTTCTCGAAGATGTCATTGATGAAAGAGTTCA 1649132 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1485694 |||| ||| | ||| |||||| || || || ||||||| Sbjct 1649133 TGATTCCCATTGCCTTGGAGGAGATACCGGTATCAGGATGCACCT 1649177 >seq1794 Length=856596 Score = 107 bits (118), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 2071800 CAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCAC---CACGCG 2071856 ||| || || ||||| ||||| || || ||||| |||| | || | ||| || Sbjct 303952 CAGTCCTGGAGCCTCATTGGGGCAGAAAAGAGACCATACGCC---ATTCTCTTGCACACG 303896 Query 2071857 GCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTC 2071916 | ||| || ||||| ||||||| || || || ||||| || |||| || ||||| Sbjct 303895 TCTCATGAAAAGGTCTGGAATCCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTC 303836 Query 2071917 CTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAG 2071976 ||| || || ||||| | || || ||||| |||| | ||||| |||||||||||||| Sbjct 303835 CTTCCCATGATTCTTCCTAAGATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAG 303776 Query 2071977 GTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||| || || |||||||| | ||||||||| || Sbjct 303775 ATAGATAGCGAAAGCGCCCTTCCTCTTGCCGCCACC 303740 >seq1733 Length=656735 Score = 95.1 bits (104), Expect = 2e-13 Identities = 160/227 (70%), Gaps = 10/227 (4%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||||||||| |||||||| ||||| || || |||||| | ||||| || ||| ||| || Sbjct 491037 ACTTGGTGACAGCCTTGGTCCCCTCGGACACAGCGTGCTTAGCCAGCTCTCCGGGCAGGA 490978 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTG---C 1485589 | | ||||| || |||||||||| || | ||| ||| |||| ||| || | Sbjct 490977 TTAAACGCACAGCAATCTGGATCTCACGCGAAGTGATGGTGG---GCTTCTTATTGTATC 490921 Query 1485590 GCGCCAGGCGGCCGGCCTCG-GTGCC-GATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || || | | | ||||| | ||| | | | |||| |||||||| | ||||||||| Sbjct 490920 GGGCAAGCCTGGCAGCCTCCTGGGCCAGCTTC--TCGAAAATGTCGTTAATAAACGAGTT 490863 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1485694 |||||| ||| | ||| || || || ||||| ||||||| Sbjct 490862 CATGATACCCATGGCCTTGGATGAAATACCGGTATCGGGATGCACCT 490816 >seq1774 Length=893538 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796151 CCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGT 796210 ||||||||| ||| | ||| ||||||||||| |||||||||||||| |||||| || | Sbjct 739171 CCTCGGGTATTTGAATCTCTTTCATGAAGCGCACGGCCAGGTTCTCAAGCACGATACCAT 739230 Query 796211 CGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCG 796263 | || ||||| || || | ||||| |||| |||||||| |||| |||| Sbjct 739231 CAGACGCTGCGAAGAAAGCCAACACGTGACTGATGAAGTGACGTTCGTTGTCG 739283 >seq1891 Length=1477505 Score = 87.8 bits (96), Expect = 3e-11 Identities = 162/229 (71%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || ||||| || ||||| ||||| |||||| | |||| || || | | Sbjct 1352049 TGAACTTCGTTACCGCCTTCGTTCCCTCCGAGACAGCGTGCTTCGCCAACTCTCCCGGTA 1351990 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGC-GCTTGTTAGTG 1485588 |||||| || || || ||||||||||| || | | |||||| | || ||||||| Sbjct 1351989 GGATCAGACGTACAGCAGTCTGGATCTCACGAGAGGTGATCGT-TGGCTTCTTGTTATAT 1351931 Query 1485589 CGCGCCAGGCGGCCGGCCT-CGGTGCCGA-TGCGGTCGATCATGTCGTTGACAAACGAGT 1485646 || ||||| || | |||| | | ||| | | | || | || ||||| | ||||||| Sbjct 1351930 CGAGCCAGACGAGCAGCCTCCTGCGCCAACTTC--TCAAAAATATCGTTTATGAACGAGT 1351873 Query 1485647 TCATGATCGACATCG-ATTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1485694 |||| || ||| | |||| | |||||||| ||| ||||| |||| Sbjct 1351872 TCATAATTCCCATAGCCTTTGAT-GAGATGCCTGTGTCAGGGTGGACCT 1351825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916034714623610