Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq1943 98.7 8e-16 seq1762 93.3 3e-14 seq1814 89.7 4e-13 seq1957 86.0 5e-12 seq1748 86.0 5e-12 seq1705 86.0 5e-12 seq1660 86.0 5e-12 >seq1943 Length=2190071 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || || || || || || || || || | ||| ||| | Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || |||||| || |||||||| | ||| ||||||| Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||||||||| | ||| || || || ||||| || | || |||| || |||||| Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAAC 1470251 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||| || ||||| |||| || | ||| |||| || Sbjct 1470252 ATTCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGAGGAGG 1470298 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || |||||||| | || || || || ||||| | ||| ||| ||| Sbjct 1469844 ATGCAAATATTCGTCAAAACGCTGACGGGGAAGACGATTACGTTGGAAGTTGAGAGCTCA 1469903 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| || |||||||| | || || || Sbjct 1469904 -GATACTATTGATAACGTTAAGACGAAGATTCAAGACAAAGAAGGTATTCCACCTGACCA 1469962 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || || ||| ||||||| | || |||| || ||||| Sbjct 1469963 GCAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGGCGTACTCTGGCCGATTACAA 1470022 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| |||||||| ||| | ||| |||||||| Sbjct 1470023 CATTCAGAAGGAGTCCACGCTTCACCTGGTGTTG 1470056 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| || ||||| || ||||| | || ||| ||| Sbjct 1470528 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACAATTACTCTAGAGGTTGAGAGCTCT 1470587 Query 107615 CGATACTGTCGGCCAGGTAAA-ACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || || || ||| || ||||||||||| | || || | Sbjct 1470588 -GATACCATAGACAACGTGAAGACCAAA-ATCCAGGATAAAGAAGGTATCCCTCCTGACC 1470645 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||| | || |||| || || || ||| | ||||||| || |||| || |||| Sbjct 1470646 AGCAGCGTCTGATTTTCGCTGGGAAGCAGTTAGAGGACGGTCGTACTCTGGCCGATTACA 1470705 Query 107734 ACATTCAAAAGGAGTCTACGTTGCAC 107759 | ||||||||||||||||| |||||| Sbjct 1470706 ATATTCAAAAGGAGTCTACCTTGCAC 1470731 >seq1762 Length=742324 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| || || || || ||||| || || || | || ||| ||| | Sbjct 519199 ATGCAAATCTTTGTGAAGACGTTGACGGGCAAGACAATCACGTTGGAGGTCGAGAGCTCG 519258 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||||||| || || ||||| | || ||||| Sbjct 519259 -GATACAATCGACAACGTGAAGACAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCA 519317 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | || || || ||| ||||||| | ||| | ||||| ||||| Sbjct 519318 GCAGCGATTGATCTTCGCTGGGAAGCAGTTGGAGGATGGGCGAACTCTCGCGGATTACAA 519377 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| |||||| | |||||| | || |||| || Sbjct 519378 TATTCAGAAGGAGTCTACCTTGCACCTTGTGTTGCGGCTGAGAGGAGG 519425 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||||||||| || || || || || || || || | || ||| | | Sbjct 518971 ATGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCC 519030 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | ||||| |||||| || || || ||| | || || ||| Sbjct 519031 GATACTATTGATAATGTAAAGACAAAGATACAGGACAAGGAGGGCATCCCTCCCGACCAG 519090 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||||| ||| ||||| || ||||| |||| || |||| || || || Sbjct 519091 CAGAGGCTTATTTTTGCAGGTAAGCAACTGGAAGACGGTCGTACTTTGGCTGATTATAAT 519150 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 || |||||||| || || ||||| | |||||| | || |||||| Sbjct 519151 ATCCAAAAGGAATCGACCTTGCATCTTGTGTTGCGGTT--GAGGGG 519194 >seq1814 Length=924488 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || || || || || || || |||||| ||||| ||| ||| | Sbjct 463320 ATGCAGATTTTTGTGAAGACCTTGACGGGAAAGACGATTACCCTCGAAGTTGAGAGCTCG 463379 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | ||||| |||||| || || || ||| | || || || Sbjct 463380 -GACACAATTGACAATGTAAAGACGAAGATTCAGGACAAGGAGGGCATCCCACCTGACCA 463438 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || || |||| |||| | || | || |||||||| Sbjct 463439 GCAGAGGTTGATTTTTGCAGGAAAGCAATTGGAAGACGGGAGGACTCTTGCTGACTACAA 463498 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGG 107781 |||||| |||||||| || || ||| | ||| | || || |||||| Sbjct 463499 CATTCAGAAGGAGTCCACTTTACACTTAGTGCTTAGGTT--GAGGGG 463543 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 107639 AAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAA 107698 ||||||| || || || ||| | || || |||||||| || |||| ||| || || Sbjct 462947 AAAGATTCAGGACAAGGAGGGCATCCCACCCGACCAGCAGAGGCTGATTTTTGCTGGGAA 463006 Query 107699 ACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCA 107758 ||| ||||||| | || | || ||||||||||| ||||| |||||||| ||||| Sbjct 463007 GCAGTTGGAGGATGGGCGCACCCTTGCCGACTACAACATCCAAAAAGAGTCTACCTTGCA 463066 Query 107759 CATGGTGTTGAGATTGCGAGGGGGAA 107784 | ||||| | || ||||| || |||| Sbjct 463067 CTTGGTGCTTAGGTTGCGGGGAGGAA 463092 >seq1957 Length=2436183 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| || |||| ||| | | Sbjct 68758 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 68817 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || |||||| || || || ||| | || || ||| Sbjct 68818 GACACTATCGACAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 68877 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||| | | || | || ||||||||| Sbjct 68878 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCCGACTACAAC 68937 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| |||||| ||||| Sbjct 68938 ATCCAGAAGGAGTCTACCTTGCACTTGGTG 68967 >seq1748 Length=695821 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| || |||| ||| | Sbjct 274771 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCT 274712 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | | || || ||||| || || || ||| | || || ||| Sbjct 274711 GATACTATCGACAATGTGAAGACGAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAG 274652 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || |||||||| ||||| | | ||| | || ||||||||| Sbjct 274651 CAGAGGCTGATCTTCGCCGGCAAACAGCTCGAGGATGGCCGAACTCTTGCCGACTACAAC 274592 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || |||||| ||||| Sbjct 274591 ATCCAGAAGGAGTCCACCTTGCACTTGGTG 274562 >seq1705 Length=561313 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| || | || ||| | Sbjct 93386 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACGCTTGAGGTCGAGTCCTCT 93327 Query 107616 GATACTGTCGGCCAGGT-AAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| ||| | | || ||||||||| ||| || || || ||| | || ||||| Sbjct 93326 GATACTATCGACAATGTGAAAACAAAA-ATTCAGGACAAGGAGGGCATTCCTCCCGATCA 93268 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | || |||| || || || ||||| || || | || |||| |||||||| Sbjct 93267 ACAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAAGATGGTCGCACCCTGGCTGACTACAA 93208 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||||||||||||| ||||| || Sbjct 93207 CATCCAGAAGGAGTCTACGTTGCACTTGGTGCTG 93174 >seq1660 Length=444603 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| || |||| ||| | | Sbjct 434692 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCC 434633 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| ||| | | || || |||||| || || || ||| | || || ||| Sbjct 434632 GACACTATCGACAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 434573 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||| | | || | || ||||||||| Sbjct 434572 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCCGACTACAAC 434513 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || ||||||||||| |||||| ||||| Sbjct 434512 ATCCAGAAGGAGTCTACCTTGCACTTGGTG 434483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398867125991110