Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1762 123 4e-23 seq1917 104 4e-17 seq1943 87.8 3e-12 >seq1762 Length=742324 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || ||||| || || || || || || | || || ||| | || Sbjct 518972 TGCAAATTTTTGTCAAGACATTGACGGGGAAGACGATAACATTGGAGGTGGAAAGTTCCG 519031 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | |||||||| | || ||||| || || ||||| || ||||| || | Sbjct 519032 ATACTATTGATAATGTAAAGACAAAGATACAGGACAAGGAGGGCATCCCTCCCGACCAGC 519091 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||||||||| ||| | || || | | || || | |||||||||| Sbjct 519092 AGAGGCTTATTTTTGCAGGTAAGCAACTGGAAGACGGTCGTACTTTGGCTGATTATAATA 519151 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||| |||||||| | ||| | || || || || || ||||||| Sbjct 519152 TCCAAAAGGAATCGACCTTGCATCTTGTGTTGCGGTTGAGGGGAGGTA 519199 >seq1917 Length=1730829 Score = 104 bits (114), Expect = 4e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | || || || | || || ||| || ||||||||||| |||||||| Sbjct 507962 GACACGATTGACAACGTTAAGACGAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCAG 508021 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| || ||||| || || |||||||| || ||| | | || || |||| || || Sbjct 508022 CAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTACAAC 508081 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||||||||| || | |||||||| ||||||| |||| || Sbjct 508082 ATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGG 508128 >seq1943 Length=2190071 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || | || ||||| || ||||| | || || || | | Sbjct 1470301 TGCAAATATTCGTGAAGACGCTTACGGGAAAGACTATTACATTGGAGGTGGAGAGTTCTG 1470360 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || || | || || ||| || ||||| |||||||| ||||| | Sbjct 1470361 ATACCATAGATAACGTCAAGACCAAGATTCAAGACAAGGAAGGTATTCCACCTGATCAGC 1470420 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | || || ||||| || || || ||||| ||| | | || | |||| || || | Sbjct 1470421 AACGGCTAATCTTTGCCGGAAAGCAGTTAGAGGATGGTCGTACTCTTGCAGACTACAACA 1470480 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || || | ||| | || | || ||||||||||||| Sbjct 1470481 TTCAGAAGGAGTCCACATTACATCTTGTCCTCCGTTTAAGAGGAGGTA 1470528 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | || ||||||||||| ||| |||| || || | Sbjct 1470757 TGCAGATTTTTGTAAAGACTCTGACTGGAAAAACAATCACTCTTGAGGTTGAGAGCTCTG 1470816 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| || | ||| || || ||| ||||| ||||| ||||| || | Sbjct 1470817 ATACTATTGATAATGTTAAGACTAAGATCCAGGATAAGGAAGGTATTCCTCCCGACCAGC 1470876 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || ||||| | || ||| | | || | | |||||||| | Sbjct 1470877 AACGGTTGATCTTTGCGGGCAAACAGCTGGAAGATGGTCGTACTCTTGCTGATTATAACA 1470936 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || | ||| | || | || | |||||||| Sbjct 1470937 TTCAGAAGGAGTCTACCTTGCATCTGGTGCTTCGCCTCAGAGGAGG 1470982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786146844110800