Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq1917 107 2e-18 seq1705 98.7 1e-15 seq1889 87.8 2e-12 seq1943 86.0 6e-12 >seq1917 Length=1730829 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || |||||||| || | || | || ||||| ||||| || |||||||| Sbjct 508356 CCTCCGCGCAAACGCAAGACCAGGTGCAAGGTCGATTCCTTTTGGATATTGTAATCAGCA 508297 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||| ||||||||| |||||| ||| ||||||||||| || Sbjct 508296 AGGGTGCGGCCATCTTCTAATTGCTTACCAGCAAAGATCAAACGCTGCTGATCGGGCGGA 508237 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| ||||| || | | || | ||||| | | ||| || Sbjct 508236 ATCCCTTCCTTGTCTTGGATTTTCGTCTTCACGTTGTCAATTGTGTCAGAGCTTTCGACC 508177 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || |||||||| ||||| || || |||||||| Sbjct 508176 TCAAGCGTGATTGTTTTACCGGTCAAGGTTTTAACAAAGATTTGCAT 508130 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| ||||| || || | |||||||| | || ||||||||||| |||||||| || Sbjct 508129 GCCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTGC 508070 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| || || | |||||| || || | || || | ||||||||||||||| Sbjct 508069 CAAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAGG 508010 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTA 137362 |||||||| ||||| | | | || || ||| | | || | |||||| | | || | Sbjct 508009 AATGCCTTCCTTGTC-TTGAATCTTCGTCTTAACGTTGTCAATCGTGTCAGAGCTCTCCA 507951 Query 137363 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || | || | ||||| || ||||| || || || || |||||||| Sbjct 507950 CCTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAAAGATTTGCAT 507902 >seq1705 Length=561313 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| || || || | ||||| || || || |||||||| || Sbjct 93159 GCCACCCCGAAGACGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCAGC 93218 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||||| || || || || | |||||||| || ||||||||||| Sbjct 93219 CAGGGTGCGACCATCTTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGTTGATCGGGAGG 93278 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| ||||||| ||| | | || | || || | || || || Sbjct 93279 AATGCCCTCCTTGTCCTGAATTTTTGTTTTCACATTGTCGATAGTATCAGAGGACTCGAC 93338 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| || | |||||||| |||| || || ||||| || ||||| ||| Sbjct 93339 CTCAAGCGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGGCT 93390 >seq1889 Length=1415477 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/237 (68%), Gaps = 12/237 (5%) Strand=Plus/Minus Query 137179 ACATGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAA 137238 ||||| ||||| | ||||| | ||| || |||| |||||||| ||||| ||||||||| Sbjct 1325964 ACATG-CCTCCCCTCAAACGAAGAACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAA 1325906 Query 137239 TCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCG 137298 |||| || || || | || || |||||| | |||| || ||||| ||| Sbjct 1325905 TCGCCCA-----------TCCTCCAACTGCTTCCCAGCAAAAATCAACCGCTGCTGGTCG 1325857 Query 137299 GGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGT 137358 || || | ||||| ||||| |||||| || | | || | ||||| | | Sbjct 1325856 GGTGGAGTACCTTCCTTGTCCTGAATTTTGGTCTTGACATCATCGATTGTGTCCGAGCTC 1325797 Query 137359 TCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 ||||| |||| || | ||||||||| |||| | || || || || |||||| || Sbjct 1325796 TCTACCTCAAGCGTGATCGTCTTGCCCCTCAAGGACTTCACAAAGATCTGCATACCT 1325740 >seq1943 Length=2190071 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 137197 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 137256 ||||| || | |||| || || || || || |||||||||||| || || | | Sbjct 1470058 CGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGCCAGAGTACGCCCA 1469999 Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 || || | || || || ||| | |||| |||||||| || || || || ||||||||| Sbjct 1469998 TCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGGAATACCTTCTTTG 1469939 Query 137317 TCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCAC 137375 || | | | || || ||| | | || | || |||| | || ||||| | || | Sbjct 1469938 TC-TTGAATCTTCGTCTTAACGTTATCAATAGTATCTGAGCTCTCAACTTCCAACGTAAT 1469880 Query 137376 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||||| || |||| ||||| |||||||||||||| Sbjct 1469879 CGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCAT 1469844 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || |||| || || || | || || || || || ||||||||||| | Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| ||||| || || ||| |||| || | |||||||| || || Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| ||| || || | | || | ||||| | ||| ||| Sbjct 1470178 ATTCCTTCTTTGTCCTGAATCTTAGTCTTCACGTTGTCGATGGTGTCAGAACTTTCCACT 1470119 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | ||||| || ||||| || || || |||||||||||| Sbjct 1470118 TCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCATA 1470071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488531847468000