Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1794 140 8e-28 seq1538 118 3e-21 seq1740 107 5e-18 >seq1794 Length=856596 Score = 140 bits (154), Expect = 8e-28 Identities = 262/379 (69%), Gaps = 7/379 (2%) Strand=Plus/Plus Query 110553 ATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGA 110612 ||||| ||||| || || |||| || || |||| ||||| || |||| ||| Sbjct 303557 ATTGAGGGTATCTACGACACTCTGAAGGAGTGTGCTGTTATTAGCAAGTCAGCTGGTGGA 303616 Query 110613 ATTGGTAT-TCACGTTCATGATATTCGCTCAAAAGG-AGCAAATATCGCAACAGCGAAGG 110670 |||||| | ||| |||||| |||| || | | || ||| | ||| || | || | Sbjct 303617 ATTGGTTTGTCA-GTTCATAATATCCGTGCTACTGGCAGCTACATTCGTGGCA-CAAACG 303674 Query 110671 GTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGA 110730 | |||| | ||| | | || ||||| || || ||||| ||||| || || || Sbjct 303675 GGACTTCTAATGGGATCATCCCGATGTTGAGGGTATTCAATGACACAGCTCGGTACGTCG 303734 Query 110731 ATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAG 110787 | || ||||| ||||| || ||| | || ||||||||||| || || |||||| | | Sbjct 303735 ACCAGGGTGGCGGCAAGAGGAAGGGCGCTTTCGCTATCTATCTGGAGCCGTGGCATGCCG 303794 Query 110788 ATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTG 110847 ||||||| || | | || ||| | || ||||| || || ||| | || || || | Sbjct 303795 ATATATTCGATTGGCTGGATCTTAGGAAGAATCATGGGAAGGAGGAAAATAGGGCTCGAG 303854 Query 110848 ATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCA 110907 || |||| |||| |||||||| |||| | ||||||| |||||| ||||| |||||| Sbjct 303855 ATCTATTCTATGGTCTGTGGATTCCAGACCTTTTCATGAGACGTGTGCAAGAGAATGGCG 303914 Query 110908 TGTGGTCTCTTATGTGTCC 110926 | ||||||||| | || || Sbjct 303915 TATGGTCTCTTTTCTGCCC 303933 >seq1538 Length=191664 Score = 118 bits (130), Expect = 3e-21 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 304936 GCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAA 304995 |||||| ||||||| ||||| ||||| | || ||| | |||||| | || | || Sbjct 168672 GCAGGCTACTCAAAGGTCTGGGCGACCTATCAAATCAATTTGCCAACGCTTGAAGGCCAA 168731 Query 304996 AGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGT 305055 ||||||||| || ||||| ||| | |||||||||||||| |||||| |||| | | ||| Sbjct 168732 AGAGGGTCGAATCCGAGGAAATTTGATGGGAAAACGTGTGGATTTTTCTGCACGTACTGT 168791 Query 305056 AATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCC 305100 ||||| || ||| | | |||| | || ||||||||||||| || Sbjct 168792 GATCACGCCAGATCCGAATATTAATATTGATGAATTAGGAGTGCC 168836 >seq1740 Length=701575 Score = 107 bits (118), Expect = 5e-18 Identities = 148/204 (73%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 304933 TATG-CAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAG 304991 |||| ||||| ||||||| || || | ||| |||| || | |||| | || | Sbjct 354545 TATGACAGGCTACTCAAAGGTCCGGGCGTCCTATAAAATCAATCTGTGCACGCTTGAAGG 354604 Query 304992 GTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAA 305051 ||||||||||||||||| || ||| | |||||||||||||| || ||| |||| | | Sbjct 354605 CGAAAGAGGGTCGTATTCGTGGAAATTTGATGGGAAAACGTGTGGACTTTTCTGCACGTA 354664 Query 305052 GTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--AT 305109 || ||||| || ||| || | || | | || ||||||||||||| || ||| | || Sbjct 354665 CCGTGATCACCCCAGATCCTAATATAAATATTGATGAATTAGGAGTACC--TTGGAGTAT 354722 Query 305110 TGCTTTAAAACTAACATTTCCAGA 305133 ||| |||| |||||| |||||| Sbjct 354723 CGCTCTAAATTTAACATATCCAGA 354746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186782539982390