Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq1990 648 0.0 >seq1990 Length=122890 Score = 648 bits (718), Expect = 0.0 Identities = 727/959 (76%), Gaps = 16/959 (2%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 ||||| ||||| | || ||||| || | |||||||| ||| | | || || Sbjct 54205 AACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATTCCTACTCTATTAACTGCAACT 54146 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||||| |||||||| ||||| || || || |||||||| ||||| || Sbjct 54145 -TCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTGTAGATATTGATGGTATCCGTGA 54087 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 || || || ||| |||||||| |||||||||||||| || | || || | || | Sbjct 54086 GCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGCTGCTATCATCCCTAC 54027 Query 19711 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || ||||| | |||||||||||||||||||||||| ||| |||||||| Sbjct 54026 TTCTGCA--GCTATCGGTTTGCACTTCTACCCAATTTGGGAAGCTGCTTCCGTTGATGAA 53969 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCAT--CT 19826 ||||| |||||||| || || | | | | | || | |||||| | |||| | || Sbjct 53968 TGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTCACTTCTTACTTGGTGTAGCT 53909 Query 19827 ATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTT 19886 |||| ||||||| || ||||||||||||||||| || |||| ||| | |||||||| Sbjct 53908 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCG 53851 Query 19887 GTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTT 19945 |||||| || || ||||| ||||| || || |||| || ||||| | ||||||| || Sbjct 53850 CTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGT-TTTCTTGATCTACCCAATT 53792 Query 19946 GGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATG 20005 ||||| || |||||||| || | ||||||||| || ||||| ||||| ||||||| |||| Sbjct 53791 GGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTCATG 53732 Query 20006 TTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCT 20065 | || |||||||| ||||| ||||| || |||||||| ||||||||||||||||| ||| Sbjct 53731 ATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCATTCCACATGCTTGGTGTAGCT 53672 Query 20066 GGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTT 20125 |||||||||||||| || ||||||||||| ||||| ||||| | || || || | Sbjct 53671 GGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCCTTAGTAACTTCAAGTTTA 53612 Query 20126 GTGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAG 20183 | ||||| |||||||| | || ||| | ||| |||||||||||||| ||||| | Sbjct 53611 ATCCGTGAAACTACTGAGAATGA--GTCTGCTAACGCAGGTTACAAGTTTGGTCAAGAGG 53554 Query 20184 AAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACG 20243 |||| || || ||||||||||| ||||| ||||||||||| | || || |||||||||| Sbjct 53553 AAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGATTAATTTTCCAATACG 53494 Query 20244 CTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGA 20303 || || ||||| |||||| ||||||||||| | ||||| ||||| || ||||| | Sbjct 53493 CTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTA 53434 Query 20304 TTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTA 20363 | |||||| |||| || || | || ||||| || || | |||||||||||||| | Sbjct 53433 TCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACTTAAACGGTTTCAACTTCA 53374 Query 20364 ACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATC 20423 |||| || || | |||| | |||||||| ||| | |||||||||||||| |||| | Sbjct 53373 ACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACACTTGGGCTGACATCATCAACC 53314 Query 20424 GTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGAC 20482 ||||||| || || | || || ||||||||||| || ||||| |||||||| || ||| Sbjct 53313 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGAC 53255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148825282989420