Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq1990 592 5e-165 >seq1990 Length=122890 Score = 592 bits (656), Expect = 5e-165 Identities = 712/959 (74%), Gaps = 18/959 (2%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 ||||| ||||| | || ||||| || | |||||||| ||| | | || || Sbjct 54205 AACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATTCCTACTCTATTAACTGCAACT 54146 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||||| |||||||| || || || || || |||||||| ||||| || Sbjct 54145 -TCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTGTAGATATTGATGGTATCCGTGA 54087 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||||| |||| |||||| || |||||||||||||| || | || || | || | Sbjct 54086 GCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGCTGCTATCATCCCTAC 54027 Query 28839 --CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || ||||| | |||||||||||||||||||||||| ||| |||||||| Sbjct 54026 TTCTGCA--GCTATCGGTTTGCACTTCTACCCAATTTGGGAAGCTGCTTCCGTTGATGAA 53969 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGT--CT 28954 ||||| |||||||| || || | | | | | || | |||||| | |||| || || Sbjct 53968 TGGCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTCACTTCTTACTTGGTGTAGCT 53909 Query 28955 ATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTT 29014 |||| ||||||| || ||||||||||||||||| || |||| ||| | || ||||| Sbjct 53908 -TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCG 53851 Query 29015 GTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCG 29074 ||| ||||| |||||||| || || || || |||| |||||| | |||||||| | | Sbjct 53850 CTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATCTACCCAATTG 53791 Query 29075 GTCAAGG----TTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTAC 29130 ||||||| |||| | |||| |||||||| || || || || || ||||||| | Sbjct 53790 GTCAAGGAAGCTTCTCT----GACGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTC 53735 Query 29131 ATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTT 29190 ||| | ||||||||||| ||||| ||||| || |||||||| ||||||||||| || || Sbjct 53734 ATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACCCATTCCACATGCTTGGTGTA 53675 Query 29191 GCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCG 29250 ||||| || ||||||||||| ||||| ||||| ||||| ||||| | || || || Sbjct 53674 GCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCCTTAGTAACTTCAAGT 53615 Query 29251 CTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAA 29310 | | ||||| || ||||| | ||| ||| |||||||||||||| ||||| Sbjct 53614 TTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAGGTTACAAGTTTGGTCAAGAG 53555 Query 29311 GAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATAT 29370 ||||| ||||| ||||||||||| ||||||||||||||||| | || || |||||||| Sbjct 53554 GAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGATTAATTTTCCAATAC 53495 Query 29371 GCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGG 29430 ||| || || || |||||| ||||||||||| | ||||| ||||| || ||||| Sbjct 53494 GCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGT 53435 Query 29431 ATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTT 29490 || |||||| |||| || || | || ||||| || || | |||||||| ||||| Sbjct 53434 ATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTCAACTTAAACGGTTTCAACTTC 53375 Query 29491 AACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAAT 29550 ||||| || || | |||| | |||||||| ||||| ||||||||||| | |||| Sbjct 53374 AACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAACACTTGGGCTGACATCATCAAC 53315 Query 29551 CGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGA 29609 || |||||||| || | ||||| |||||||| ||||| ||||| |||||||| || || Sbjct 53314 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGA 53256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146662134108540