Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1705 116 4e-21 seq1657 104 2e-17 seq1943 86.0 6e-12 >seq1705 Length=561313 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||| || || ||||||||||| || ||| || | Sbjct 93172 CGCAGCACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCA 93231 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||| || |||| | || |||||||||||||| ||||| ||||| || || Sbjct 93232 TCTTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGTTGATCGGGAGGAATGCCCTCCTTG 93291 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||||| | || | |||||| | | ||| || || | ||| | Sbjct 93292 TCCTGAATTTTTGTTTTCACATTGTCGATAGTATCAGAGGACTCGACCTCAAGCGTGATG 93351 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || || ||||| || || | ||| ||||||||| || Sbjct 93352 GTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGGCT 93390 >seq1657 Length=432565 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||||||| | | | |||||||| || ||||||||||| || || || Sbjct 17381 GCGCAGCACCAAATGCAAGGTAGACTCTTTCTGGATGTTGTAGTCAGCCAGAGTGCGGCC 17322 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| |||||||| || |||| |||| |||||||| || || ||||| || || || || Sbjct 17321 ATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTT 17262 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || |||||| ||||| | || | ||| || | ||| || |||| ||| | Sbjct 17261 GTCTTGAATTTTGGTTTTCACATTATCGATAGTGTCAGAACTCTCGACCTCGAGCGTGAT 17202 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || || ||||| || || | ||| ||||||||| Sbjct 17201 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 17165 >seq1943 Length=2190071 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || |||||| |||| || | | ||||| || ||||||||||| ||| || ||||| Sbjct 1470062 CAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAATGTTGTAATCGGCCAGAGTACG 1470003 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||| || | ||| || |||| | | || | || || || || || || || ||||| Sbjct 1470002 CCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTGCTGGTCAGGTGGAATACCTTC 1469943 Query 132025 TTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 ||| || | | | || || | ||| | || | |||||| | ||| ||||| | || Sbjct 1469942 TTTGTC-TTGAATCTTCGTCTTAACGTTATCAATAGTATCTGAGCTCTCAACTTCCAACG 1469884 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | | ||| || || ||||| ||||| | ||| || |||||| Sbjct 1469883 TAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTTGCATG 1469843 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||| ||| | | | ||||| || |||||||| || || | ||||| |||||| Sbjct 1470964 ACCAGATGCAAGGTAGACTCCTTCTGAATGTTATAATCAGCAAGAGTACGACCATCTTCC 1470905 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 |||||||| || | | |||| | || || || || ||||| || ||||| ||||| Sbjct 1470904 AGCTGTTTGCCCGCAAAGATCAACCGTTGCTGGTCGGGAGGAATACCTTCCTTATCCTGG 1470845 Query 132035 ATTTTTTGTTTCAACTGT-TCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || || | ||| | || | |||||| | ||| || || | || | ||||| Sbjct 1470844 ATCTTA-GTCTTAACATTATCAATAGTATCAGAGCTCTCAACCTCAAGAGTGATTGTTTT 1470786 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| |||| ||||||||||| Sbjct 1470785 TCCAGTCAGAGTCTTTACAAAAATCTGCAT 1470756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476599344296400