Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq1917 95.1 1e-14 seq1943 89.7 5e-13 seq1762 86.0 6e-12 seq1748 84.2 2e-11 seq1705 82.4 7e-11 >seq1917 Length=1730829 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | ||||| || || || || || || | ||||| | || || || | Sbjct 507901 CATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTC 507960 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || || | || || || ||| || || || || || || |||||||| Sbjct 507961 TGACACGATTGACAACGTTAAGACGAAGATTCAAGACAAGGAAGGCATTCCTCCCGATCA 508020 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 |||||| || |||| || |||||||||| | || |||| | | | || || || ||| Sbjct 508021 GCAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCA--GACTAC 508078 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || ||||||||||| ||| | |||||||| || ||||| |||| || Sbjct 508079 AACATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGG 508128 >seq1943 Length=2190071 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || || | ||||| | ||||| ||| Sbjct 1470072 ATGCAAATATTTGTTAAGACGTTGACGGGGAAGACTATCACATTAGAAGTGGAAAGTTCT 1470131 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| || ||||| || || || || |||||| Sbjct 1470132 GACACCATCGACAACGTGAAGACTAAGATTCAGGACAAAGAAGGAATTCCCCCGGATCAG 1470191 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||||| || | | |||||| ||||| ||||||| | | | | | |||||||| Sbjct 1470192 CAGAGACTTATCTTTGCCGGCAAGCAACTGGAAGATGGTCGTACTTTGGCTGATTACAAC 1470251 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || |||||| | || || || | | ||||||||||| Sbjct 1470252 ATTCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGCTTGAGAGGAGG 1470298 >seq1762 Length=742324 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| || || || || || || | |||||| | || ||||| | Sbjct 519199 ATGCAAATCTTTGTGAAGACGTTGACGGGCAAGACAATCACGTTGGAGGTCGAGAGCTCG 519258 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || || ||| ||| || || || ||||| || ||||||||| Sbjct 519259 GATACAATCGACAACGTGAAGACAAAGATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 519318 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | || || || || | || |||| ||| | || ||||||||| Sbjct 519319 CAGCGATTGATCTTCGCTGGGAAGCAGTTGGAGGATGGGCGAACTCTCGCGGATTACAAT 519378 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||| || || || ||| | || | ||||| | |||||||||| Sbjct 519379 ATTCAGAAGGAGTCTACCTTGCACCTTGTGTTGCGGCTGAGAGGAGG 519425 >seq1748 Length=695821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | ||||| || || | || || || | ||||| |||| ||||| | Sbjct 274775 CACCATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTC 274716 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||||||||| | || || || || || || ||||| || ||||| || Sbjct 274715 CTCTGATACTATCGACAATGTGAAGACGAAGATCCAGGACAAGGAGGGCATTCCGCCTGA 274656 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| || || || | || ||||||||| ||||| |||| ||| | | ||| || Sbjct 274655 CCAGCAGAGGCTGATCTTCGCCGGCAAACAGCTCGAGGATGGCCGAACTCTTGCCGACTA 274596 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||| || || || || |||||| | || || ||| Sbjct 274595 CAACATCCAGAAGGAGTCCACCTTGCACTTGGTG 274562 >seq1705 Length=561313 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || | || || || | |||||| | || ||||| || Sbjct 93387 CATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACGCTTGAGGTCGAGTCCTC 93328 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||||||||| | || ||| ||||||| || || ||||| || || |||||||| Sbjct 93327 TGATACTATCGACAATGTGAAAACAAAAATTCAGGACAAGGAGGGCATTCCTCCCGATCA 93268 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG 25331 || | || |||| || |||||| || |||||||||| Sbjct 93267 ACAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAAGATG 93230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445083328276800