Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq1886 107 3e-17 >seq1886 Length=1372085 Score = 107 bits (118), Expect = 3e-17 Identities = 218/314 (69%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 1455990 GTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGAT 1456049 ||| ||||| |||||||| || || || ||||| ||||| |||| ||| | || | Sbjct 694308 GTTCTACGGATTCCAGATAGCTATTGAGAACATTCACTCAGAAATGTACAGTTTGTTGTT 694367 Query 1456050 CGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGT 1456109 || | ||| | || || | | |||||| | || || ||||| || || | Sbjct 694368 GGAGGCGTACATTAAAGATCAAGCTGAGAAGAGCAGACTTTTCAATGCCATTGAGACCAT 694427 Query 1456110 GCCGT-CGGTG--AGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166 || | || || ||||| ||| |||||||| | || |||||| ||| | || Sbjct 694428 ACCTTGCGTTGCTAGGAA---GGCTGACTGGGCTCTAAAATGGATCGACAGTGCTGG--- 694481 Query 1456167 CGACACTTTGCCGAGCGGCTCGTCGGCTTT-GCC-GCGTCGAGGGCATCTTTTTCTCGGG 1456224 || |||||| ||| | || | |||||| ||| |||||||||| || || || || || Sbjct 694482 -GAG-CTTTGCAGAGAGAATCCT-GGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGG 694538 Query 1456225 CAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTA 1456284 ||||| |||||||||||||||||||||||| | || || ||||| || ||| | ||| Sbjct 694539 GAGTTTTTGCGCCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACG-TTTT 694597 Query 1456285 GCAACGAATTTATC 1456298 ||||||| | ||| Sbjct 694598 CCAACGAACTCATC 694611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177619260842380