Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1990 690 0.0 >seq1990 Length=122890 Score = 690 bits (764), Expect = 0.0 Identities = 761/1009 (75%), Gaps = 6/1009 (1%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||||| ||||| ||| || | ||||| | || | || ||||||||||| | Sbjct 54233 CTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTT 54174 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 ||||||||||| | | |||||||| ||||| || || | || ||| | || |||| Sbjct 54173 AATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTC 54115 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | ||||| || ||||| || ||||| || || ||| ||||||| || | || || |||| Sbjct 54114 CTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACA 54055 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 |||||||||||| ||| | | |||| ||| || |||||| | ||||||||||| | Sbjct 54054 ACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAA 53995 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| || || |||| || ||||| || ||||||||||||| | | | | | Sbjct 53994 TTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCG 53935 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | ||| ||||| |||||||||||||| |||| Sbjct 53934 TTCTTCACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTACC 53875 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 ||||||||||||| || |||||| ||| |||||||| ||||| || || || || | || Sbjct 53874 GTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACTG 53815 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | || ||| | |||| || | |||||||| ||||| || | ||||||| | || | Sbjct 53814 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGAA 53755 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 ||||||||||||| |||| |||| |||| |||||||| |||||||||||||||||||||| Sbjct 53754 TCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCACC 53695 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | ||||| ||||| ||||| ||||| ||||||||||| ||||| ||| ||||||||||| Sbjct 53694 CATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCATG 53635 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | | || ||||| | | |||||||| ||||| | ||||| ||| | Sbjct 53634 GTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCAG 53575 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 |||| ||||| |||||||| ||||| || ||||||||||| || || || || ||||| | Sbjct 53574 GTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTTG 53515 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 || | || || |||||||||||| || |||||||| ||||| || ||||||||| | | Sbjct 53514 GTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTAG 53455 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCA--ACCATGGCATT 158511 |||| |||||||| || || ||||||||||| || | || | ||| || ||||| || Sbjct 53454 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGG--TATCAGCACTATGGCTTT 53397 Query 158512 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 158571 |||| | |||||||||||||||||||| || | |||| |||| |||||||| | || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 158572 CACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAA 158631 ||| ||||| || | | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 158632 CGCACACAACTTCCCACTGGATCTTGCTGCTGCTGAGTCTACACCTGTA 158680 ||| ||||||||||| || || | ||| ||| ||| || | ||||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAAGCTCCTTCTGTA 53228 Score = 628 bits (696), Expect = 3e-175 Identities = 741/1003 (74%), Gaps = 0/1003 (0%) Strand=Plus/Minus Query 159389 TGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 159448 ||||||||||||| | | |||| || ||||| ||||| ||||||||||| || ||||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 159449 TTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTTATCACGAGTT 159508 |||| |||||| | | | || || ||| |||| || || |||||| | || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 159509 GGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGGTGCTAATTTTCTCACGGCAGCTG 159568 |||| || || || | ||||| || || | |||||| ||||||||| || || |||| Sbjct 44334 GGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTG 44275 Query 159569 TCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 159628 | || || |||||| || | | | ||||| | | ||| | |||||||| || | | Sbjct 44274 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCAC 44215 Query 159629 AAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACG 159688 |||| || ||| || ||||| ||| | ||||| | ||| | || |||||||| || | Sbjct 44214 AAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATG 44155 Query 159689 GTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCGTCTAGTTGGTA 159748 | || || ||| | ||||| |||||| | || |||||||| ||||| | || Sbjct 44154 GAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTACAAT 44095 Query 159749 TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCC 159808 | |||||||| || || ||||| || ||||| || |||||||||||||| ||||| Sbjct 44094 TACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTTT 44035 Query 159809 TTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAA 159868 | || || ||||| ||||| || ||||| |||||||||||||| || || ||||||| Sbjct 44034 TAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCAA 43975 Query 159869 TCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATA 159928 | || ||||| | || ||| | || |||||||| |||||||| | ||||| || |||| Sbjct 43974 TTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCATA 43915 Query 159929 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTG 159988 |||||||||||||||| | | || | || || || ||||| || |||||||| |||| Sbjct 43914 TGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACTG 43855 Query 159989 TAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTA 160048 |||| || || || ||||||||||| || ||||| ||||| |||||| | || | Sbjct 43854 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAA 43795 Query 160049 CTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160108 ||||| ||||| |||||||||||||| || || ||||| |||||||| || ||||||| Sbjct 43794 CTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTCG 43735 Query 160109 GTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 160168 ||||||||||||||||||| || ||| | ||||| || ||| | ||||| || || | | Sbjct 43734 GTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACTG 43675 Query 160169 GTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACGATT 160228 || |||||| ||||||| | ||||| | ||||| || | || ||||| |||| Sbjct 43674 GTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGATT 43615 Query 160229 TCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCTACACCAAGA 160288 | || |||||| ||| | ||||| ||||| ||||||||||| || || ||||| || | Sbjct 43614 TTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAAA 43555 Query 160289 ACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATCAACCACATGAAA 160348 | || || | |||||||| ||||||||||||||||| || ||||| || ||||||| Sbjct 43554 ATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAA 43495 Query 160349 ACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 | || | ||||| ||||| || ||||| | || ||||| || Sbjct 43494 ATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573009746028000