Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq1990 691 0.0 >seq1990 Length=122890 Score = 691 bits (766), Expect = 0.0 Identities = 754/995 (76%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||||| ||||| || || | |||||||| || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 |||||||| ||||| || | ||||| ||||| || || | || ||| | || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 ||||| || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 ||||||||||| ||| | | || |||| || || ||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| || || ||||||| ||||| || ||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 160259 ATTTCACTTCCTTATCGGCAT--CTATGCATATATGGGACGTGAGTGGGAACTTTCATAC 160316 |||||||| | | || | || ||| || ||||| ||||||||||||||| ||| Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 160317 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 160376 |||||||||||||| || |||||| ||| |||||||| ||||| || || || || || Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 160377 GCTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGT 160436 ||||| ||| | | || || | |||||||| ||||| || | ||||||| | || Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 160437 ATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCAT 160496 |||||||||||||| |||| |||| |||| |||||||| |||||||| ||||||||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 160497 CCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCAC 160556 || ||||||||||| || || ||||| ||||||||||| ||| | ||| ||||||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 160557 GGAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTAC 160616 || | || ||||| | | |||||||| ||||| | ||||| ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCA 53576 Query 160617 GGTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTC 160676 ||||| ||||| |||||||||||||| || ||||||||||| || || || |||||||| Sbjct 53575 GGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTT 53516 Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 ||| | || || |||||||| || || |||||||| ||||| | ||||||||| | Sbjct 53515 GGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTA 53456 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 160796 || || ||||||||||| || |||||||||||||| | ||| | ||||| ||||| ||| Sbjct 53455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTC 53396 Query 160797 AACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAAC 160856 ||| | |||||||||||||||||||| || | | || ||||||||||||| | ||| Sbjct 53395 AACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAAC 53336 Query 160857 ACCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 160916 || ||||| ||| | | || |||||| ||||||||||||||||||||||| |||||| Sbjct 53335 ACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 53276 Query 160917 GCACACAACTTCCCACTCGACCTCGCTGCTGCTGA 160951 || ||||||||||| || ||| | ||| ||| ||| Sbjct 53275 GCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 508 bits (562), Expect = 7e-139 Identities = 719/1010 (71%), Gaps = 8/1010 (1%) Strand=Plus/Minus Query 161700 GACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTCTT 161759 || |||||||| | | | || ||||| || ||||| || |||||||| || | ||| || Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 161760 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAACTTTCGCAACGAGCTGG 161819 || |||||| || || | || || ||| |||| || |||||||| | ||| ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 161820 TATACCCATGGTCTCGCTAGTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCGTCAGTT 161879 ||||| ||||| | ||||| || ||| | || ||| || ||||| || || | ||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 161880 AGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAA 161939 ||||| ||| | | | | ||||| | | || | |||||||| || || ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 161940 GGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGT 161999 || |||||| || ||| ||| | || || || |||| ||| || || || ||||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 162000 GCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTA-- 162057 || || || |||| || || ||| | || || ||||| || || | || ||| Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTACA 44097 Query 162058 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTT 162115 | ||||| || || || ||||| || ||||| || |||||||||||||| || || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 162116 CCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGC 162175 | || |||||| | ||||| || |||||||||| || || ||||| || ||||| Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 162176 AATCTTTAGATTCCTGTTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCA 162235 ||| || ||||| | || || | ||||| |||||||||||||| | ||||| || || Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 162236 TATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCTATCTGCTATTCACGGAGTCAC 162295 |||||||||||||||||| | | || | || ||| ||| ||||||||| || | || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 162296 AGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTC 162355 || |||||||| |||| || ||||| || ||||| || || |||||| | | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 162356 GACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTT 162415 || || ||||| |||||||||||||| || || ||||| |||||||| || ||||| Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 162416 CGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTAT 162475 |||| |||| ||||||||||| || ||| | ||||| || ||| | ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 162476 GGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGA 162535 ||| |||||| ||||||| | ||||| | ||| | || | || ||||| || Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 162536 TTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGAGTTTGAAACGTTCTACACTAA 162595 ||| || |||||| || | ||||| ||||| ||||| |||||||| || |||||||| Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 162596 GAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGCACCTGCCGACCAACCCCATGA 162655 || ||||| || |||||||| | ||||| ||| | ||| || || || || ||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 162656 GAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAACGCCCTTTAAT 162705 || || | |||||||| || ||||| || | || ||||| ||||||| Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 43447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559490082338000