Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1990 663 0.0 >seq1990 Length=122890 Score = 663 bits (734), Expect = 0.0 Identities = 739/981 (75%), Gaps = 8/981 (1%) Strand=Plus/Minus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||||| ||||| || || | |||||||| || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 |||||||| ||||| || | |||||| ||||| || || | || ||| | || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 ||||| || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 ||||||||||| ||| | | || |||| || || ||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 |||||||| || || ||||||| ||||| || ||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 181280 CTTTCACTTCCTTATCGGCATTTA---TGCATACATGGGACGTGAATGGGAACTCTCTTA 181336 |||||||| | | || | || ||| |||||||| ||||| |||||||| || Sbjct 53933 TCTTCACTTCTTACTTGG--TGTAGCTTGC-TACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 181337 CCGCTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATC 181396 ||| ||||||||||| || |||||| ||||||||| || ||||| || || || || | Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 181397 TGCTGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGG 181456 |||||| ||| | |||| || | |||||||| |||||||||| ||||| | || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 181457 CATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCA 181516 ||||||||||| ||||||| |||| |||| |||||||| || |||||||| || ||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 181517 TCCCTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCA 181576 || ||||||||| | ||||| || |||||||| ||||| || || |||||||| ||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 181577 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTA 181636 ||||| || || || || | ||||||| || ||||| | |||||| ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 181637 TGGTTACAAGTTCGGACAAGAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTT 181696 ||||||||||| || ||||| ||||| || ||||||||||| || || ||||||||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 181697 TGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCT 181756 |||| | || || |||||||| ||| || |||||||| ||||| | ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 181757 CGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATT 181816 || || ||||||||||| || ||||||||||| ||| | || | ||||| ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 181817 TAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAA 181876 ||| | || || |||||||||||||| ||| | | ||| | ||||| ||||| | || Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 181877 CACCTGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAA 181936 ||| ||||| ||| | |||||||||| || || |||||||| ||||| || || || Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 181937 CGCGCACAACTTCCCGCTTGA 181957 ||| ||||||||||| || || Sbjct 53276 CGCTCACAACTTCCCTCTAGA 53256 Score = 518 bits (574), Expect = 4e-142 Identities = 719/1004 (72%), Gaps = 2/1004 (0%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 |||| |||||| | | | | || || ||||| ||||| ||||||||||| || ||||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| |||||| || | | || || ||| |||| || ||| ||||||| || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTG 182550 |||| || || || | ||| || ||| | |||||| ||| ||||| || || |||| Sbjct 44334 GGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTG 44275 Query 182551 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 182610 | || || |||||| || | | | ||||| | | ||| | |||||||| || | | Sbjct 44274 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCAC 44215 Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 | || ||||| || ||||| ||| | || || || |||| |||||| ||||| || | Sbjct 44214 AAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATG 44155 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGAA 182730 | || || ||| | || || || ||| | | |||||||| |||||| | | | || Sbjct 44154 GAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGA-TCCGTACAA 44096 Query 182731 TCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | | | ||||| || || |||||||||||||| || |||||||| || || ||| || Sbjct 44095 TTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTT 44036 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCG 182849 | || || || | || || || ||||||||| || || |||||||| || || Sbjct 44035 TTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCA 43976 Query 182850 ATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCCAT 182909 || ||| | ||| | || ||| | || |||||||| |||||||| | ||||| || ||| Sbjct 43975 ATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCAT 43916 Query 182910 ATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACA 182969 ||||||||||||||||| | |||| | || || | ||||||| ||||||| || Sbjct 43915 ATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACT 43856 Query 182970 GTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCC 183029 ||||| ||||| || | ||||||||| || ||||| ||||| ||||| | | Sbjct 43855 GTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCA 43796 Query 183030 ACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTC 183089 ||||| || || || ||||| ||||||||||| || ||||| ||||| ||||||||| Sbjct 43795 ACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTC 43736 Query 183090 GGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATG 183149 || ||||| ||| || || ||||||||||| ||||||||| | ||||| || || | Sbjct 43735 GGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACT 43676 Query 183150 GGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGAT 183209 ||| | ||| | | ||||||| | |||| | ||| | ||| | || ||||||||| Sbjct 43675 GGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGAT 43616 Query 183210 TTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAAAG 183269 ||||| ||| || ||| | ||||| ||||| ||||| || || || || ||||| || Sbjct 43615 TTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAA 43556 Query 183270 AACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATGAA 183329 || || ||||| |||||||| | ||||||||| ||||| || ||||| || |||||| Sbjct 43555 AATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAA 43496 Query 183330 AACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 || | | ||||| || || |||||||| | || ||||| || Sbjct 43495 AATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614602311387200