Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1990 646 1e-180 seq1820 107 3e-18 seq1812 107 3e-18 >seq1990 Length=122890 Score = 646 bits (716), Expect = 1e-180 Identities = 719/957 (75%), Gaps = 2/957 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || || |||||| |||| |||||||||||| ||||||||||||| | ||| | |||||| Sbjct 54205 AACCGCCTTTACATCGGATGGTTCGGTGTTTTAATGATTCCTACTCTATTAACTGCAACT 54146 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| || ||||| |||||| | | ||||| || || || || || || |||||||| Sbjct 54145 -TCTGTATTTATTATTGCTTTCATTGCAGCTCCTCCTGTAGATATTGATGGTATCCGTGA 54087 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 || || ||||||| || | || ||||||||||||||||||| ||| | | |||| Sbjct 54086 GCCTGTTTCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGCTGCTATCATCCCTAC 54027 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||| || |||||| | |||||||||||||| |||||||| || | | || ||||| Sbjct 54026 TTCTGCAGCTATCGGTTTGCACTTCTACCCAATTTGGGAAGCTGCTTCCGTTGATGAATG 53967 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 ||| |||||||||||||||| | | || | || | |||||| | ||||| | Sbjct 53966 GCTTTACAACGGTGGTCCTTACGAGTTAATCGTTCTTCACTTCTTACTTGGTGTAGCTTG 53907 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 ||| ||||| |||||||||||||| || |||||||||||| | ||||||||| ||| Sbjct 53906 CTACATGGGTCGTGAGTGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATCGCTGT 53847 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||||| || || || ||||| || ||| | || || ||| | |||| || | ||||| Sbjct 53846 TGCATATTCAGCTCCTGTTGCGGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 53787 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||| ||||| |||| ||||| || || |||||||| || ||||||| |||| | || Sbjct 53786 AGGAAGCTTCTCTGACGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTCATGATTGT 53727 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 |||||||| ||||| |||||| | |||||||| ||||||||| | || || || ||||| Sbjct 53726 GTTCCAAGCTGAACACAACATCCTTATGCACCCATTCCACATGCTTGGTGTAGCTGGTGT 53667 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 |||||||| || | ||| || ||||||||||| | || || || | |||| Sbjct 53666 ATTCGGTGGCTCTCTATTCAGTGCTATGCATGGTTCCTTAGTAACTTCAAGTTTAATCCG 53607 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 ||| || ||||| | |||||| ||| ||||||||||| || ||||| ||||| || Sbjct 53606 TGAAACTACTGAGAATGAGTCTGCTAACGCAGGTTACAAGTTTGGTCAAGAGGAAGAAAC 53547 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || |||||||| || || || || ||||| ||| | || || |||||||||||| || Sbjct 53546 TTACAACATCGTAGCTGCTCACGGTTACTTTGGTAGATTAATTTTCCAATACGCTAGCTT 53487 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 |||||||| || || | |||||||||||||| || ||||| || || ||||||||||| Sbjct 53486 TAACAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTT 53427 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 ||| ||| | ||| | ||| ||||| |||||| | || ||||||||||||||||| || Sbjct 53426 CACTGCATTAGGTATCAGCACTATGGCTTTCAACTTAAACGGTTTCAACTTCAACCAATC 53367 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 |||| | ||| | |||||| | || | ||||| ||||| || | | ||| | ||| Sbjct 53366 TGTTGTTGACAGTCAAGGTCGTGTTATTAACACTTGGGCTGACATCATCAACCGTGCTAA 53307 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGATTTGGC 175450 ||||| |||||||| |||||||| | || || ||||||||||| ||||| || || Sbjct 53306 CCTTGGTATGGAAGTTATGCATGAACGTAACGCTCACAACTTCCCTCTAGACTTAGC 53250 Score = 497 bits (550), Expect = 2e-135 Identities = 715/1008 (71%), Gaps = 0/1008 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||| | |||| |||||||| ||||| | ||| | ||| | || |||||||| | Sbjct 44462 TGATAGTATGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCT 44403 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | ||||| |||| |||||| || | | || || ||| |||| || ||||||||||| Sbjct 44402 ATTACTTTTTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGT 44343 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGGTGCTAACTTTCTCAC 176032 || ||||| || ||||| | ||| || ||| | || ||| ||| ||||| || Sbjct 44342 AACTTCATGGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAAC 44283 Query 176033 AGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCC 176092 || ||||| || ||||||||| || | | | ||||| | | ||| | |||||||| Sbjct 44282 TGCTGCTGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCC 44223 Query 176093 TGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGC 176152 ||| | || || || ||| || ||| ||| | ||||| || ||| | || ||||| Sbjct 44222 AGAAGCACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGC 44163 Query 176153 TCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACT 176212 ||| || || || || ||| | || || || ||| | || || ||||| || || ||| Sbjct 44162 TCTTCATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATC 44103 Query 176213 CATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAG 176272 | | | ||||| || ||||| ||||| || ||| || || ||||| ||||| Sbjct 44102 CGTACAATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTC 44043 Query 176273 TGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||| ||| | | |||||||| |||||||| ||||| ||||| || |||||||| Sbjct 44042 TGTATTTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGT 43983 Query 176333 GGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCC 176392 |||||||| || ||||| | || || | || |||||||| |||||||| | ||||| Sbjct 43982 TGCAGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCC 43923 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 || |||||||||||||||||||| | | || | || || ||| ||| || ||||| Sbjct 43922 ATTTCATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGG 43863 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTT 176512 | ||||| |||||||| ||| ||||||||| || || || ||| |||||| Sbjct 43862 TGCAACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTT 43803 Query 176513 CGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCA 176572 | | || || ||||| || ||||| |||||||| || ||||| |||||||| || Sbjct 43802 TAACCCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCA 43743 Query 176573 AATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCC 176632 ||||||||| ||||| ||| ||| || |||||| | || ||||||||| | ||||| || Sbjct 43742 AATCTTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACC 43683 Query 176633 TGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGC 176692 || | ||| | ||| | |||||| | |||| | ||| | ||| | || || Sbjct 43682 AGTAACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGC 43623 Query 176693 TTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCTA 176752 |||||||||||| || || ||| | ||||| ||||| ||||| ||||||||||| || Sbjct 43622 TTATGATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTA 43563 Query 176753 CACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAACC 176812 ||| || || || ||||| || ||||| | | || ||||||||| || ||||| || Sbjct 43562 CACTAAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCC 43503 Query 176813 ACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 ||||| ||||||||||||| || |||||||| | || ||||| Sbjct 43502 TCATGAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGC 43455 >seq1820 Length=971917 Score = 107 bits (118), Expect = 3e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 161437 GAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTC 161496 ||||||||||||| ||||| | || ||| ||| || || |||||||| ||||| Sbjct 565962 GAACTACAGAGAGGCCTATGGTCTTTTTGCTTGTAATGGGATCCTCTTCAACCACGAGTC 565903 Query 161497 ACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAG 161556 |||||| | || |||| || || ||| | || |||||| | | | | ||||||| Sbjct 565902 ACCACGCAGAGGAGAGAACTTTGTCACCAGAAAAATTACTCGAGCAATTGGTCGTATTAA 565843 Query 161557 TACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCA 161616 | || || ||| | || | ||| ||||| || || || || |||||||| Sbjct 565842 GATTGGGCTCCAGAAGAAACTCTTCCTTGGTAACCTGAAGGCATCTCGTGATTGGGGCTT 565783 Query 161617 TGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTA 161676 ||||| ||| || || |||| ||||||| | ||||| || ||||| | || ||||| || Sbjct 565782 TGCTGGAGATTACGTTGAGGGTATGTGGCTTATGTTGCAGCAGGAGAAGCCAGATGATTA 565723 Query 161677 TGTGATTGCCAC 161688 ||| |||| || Sbjct 565722 TGTCCTTGCTAC 565711 >seq1812 Length=932957 Score = 107 bits (118), Expect = 3e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 161437 GAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATGAGTC 161496 ||||||||| ||| || || || || | | ||| ||||| |||||||| ||||| Sbjct 171413 GAACTACAGGGAGGCCTACGGCCTGTTTGCTTGCAATGGGATTCTTTTCAACCACGAGTC 171472 Query 161497 ACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTACTAGGGGACTATCCCGTATTAG 161556 ||||| ||||||||| || || ||| | |||||||| | | | | ||| || | Sbjct 171473 TCCACGCAGGGGTGAGAACTTTGTCACCAGGAAGATTACCCGCGCAATTGGCCGCATCAA 171532 Query 161557 TACAGGACTACAGGATTGTCTATACCTAGGTAATCTAAACTCAAGACGAGATTGGGGTCA 161616 | ||||| ||| | || | ||| || || || || | || |||||||| Sbjct 171533 GATTGGACTTCAGAAGAAGCTTTTCCTTGGAAACCTGAAGGCCTCTCGTGATTGGGGATT 171592 Query 161617 TGCTGAAGACTATGTGGAGGCTATGTGGTTGATGTTACAACAGGAAACTCCTGATGACTA 161676 ||||| |||||| ||||||| |||||| | ||||| || || || | ||||||||||| Sbjct 171593 TGCTGGAGACTACGTGGAGGGCATGTGGCTCATGTTGCAGCAAGACAAGCCTGATGACTA 171652 Query 161677 TGTGATTGCCAC 161688 || ||||||| Sbjct 171653 CGTTCTTGCCAC 171664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729911443001200