Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq1990 657 0.0 >seq1990 Length=122890 Score = 657 bits (728), Expect = 0.0 Identities = 740/983 (75%), Gaps = 12/983 (1%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||||| ||||| || || | |||||||| || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 |||||||| ||||| || | |||||| ||||| || || | || ||| | || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 ||||| || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 ||||||||||| ||| | | || |||| || || ||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| || || ||||||| ||||| || ||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 178148 ATTTCACTTCCTCATTGGTAT--CTATGCATACATGGGACGTGAGTGGGAACTTTCATAC 178205 |||||||| | ||||| | || ||| |||||||| ||||||||||||||| ||| Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 178206 CGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCG 178265 |||||||||||||| || |||||| ||| ||||| || ||||| || || || || | Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 178266 GCAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGC 178325 || || ||| || |||| || | |||||||| || ||||||| ||||| | || Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 178326 ATCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCAC 178385 ||||||||||| ||||||| |||| |||| |||||||| ||||||||||| || |||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 178386 CCCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCAC 178445 || ||||||||| | ||||| || |||||||||||||| || || |||||||| ||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 178446 GGTTCTTTGGTTACATC---TTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAAC 178502 ||||| || || || || || | || |||||||| ||||| | || || ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATC---CGTGAAACTACTGAGAATGAGTCTGCTAAC 53579 Query 178503 TATGGTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTAC 178562 ||||| ||||| || ||||| ||||| || ||||||||||| || || || || ||| Sbjct 53578 GCAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTAC 53519 Query 178563 TTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTC 178622 || ||| | || || |||||||| ||| || |||||||| ||||| | ||||||||| Sbjct 53518 TTTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTC 53459 Query 178623 CTCGCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCA 178682 | || || ||||||||||| || ||||||||||| ||| | || | ||||| ||||| Sbjct 53458 TTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCT 53399 Query 178683 TTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTC 178742 || ||| | || || |||||||||||||| || | | ||| | ||||| ||||| | Sbjct 53398 TTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATT 53339 Query 178743 AACACATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGC 178802 ||||| ||||| ||| | |||||||||| || || |||||||| ||||| || || Sbjct 53338 AACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGT 53279 Query 178803 AACGCGCACAACTTCCCGCTTGA 178825 ||||| ||||||||||| || || Sbjct 53278 AACGCTCACAACTTCCCTCTAGA 53256 Score = 506 bits (560), Expect = 2e-138 Identities = 715/1004 (71%), Gaps = 8/1004 (1%) Strand=Plus/Minus Query 179233 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 179292 |||| |||||| | | | | || || ||||| ||||| ||||||||||| || ||||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 179293 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 179352 |||| |||||| || | | || || ||| |||| || ||| ||||||| || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 179353 GGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTTACGGCAGCTG 179412 |||| || || || | ||||| || ||| | || ||| ||| ||||| || || |||| Sbjct 44334 GGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTG 44275 Query 179413 TCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 179472 | || || |||||| || | | | ||||| | | ||| | |||||||| || | | Sbjct 44274 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCAC 44215 Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 | || ||||| || ||||| ||| | || || || |||| |||||| ||||| || | Sbjct 44214 AAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATG 44155 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGCCTGATTGGTA 179592 | || || ||| | || || || ||| | | |||||||| |||||| | || ||| Sbjct 44154 GAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAG----ATCCGTA 44099 Query 179593 TCA----GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTT 179648 | | ||||| || || |||||||||||||| || |||||||| || || ||| Sbjct 44098 CAATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTA 44039 Query 179649 TTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCG 179708 || | || || || | || || || ||||||||| || || |||||||| || Sbjct 44038 TTTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCA 43979 Query 179709 GCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCCCTTC 179768 || || ||| | ||| | | ||| | || |||||||| |||||||| | ||||| || Sbjct 43978 GCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTT 43919 Query 179769 CATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGGAGTT 179828 |||||||||||||||||||| | | |||| || || | ||||||| ||||| | Sbjct 43918 CATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCA 43859 Query 179829 ACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGAT 179888 |||||||| ||||| || | ||||||||| || |||||||| || |||||| | Sbjct 43858 ACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAAC 43799 Query 179889 TCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATC 179948 | || || ||||| |||||||||||||| || || ||||| |||||||| || ||| Sbjct 43798 CCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATC 43739 Query 179949 TTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTT 180008 |||||| |||||||||||||||| || ||| | ||||| || ||| | ||||| || || Sbjct 43738 TTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTA 43679 Query 180009 ATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTAC 180068 | ||| |||||| ||||||| | ||||| | ||| | || | || ||||| Sbjct 43678 ACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTAT 43619 Query 180069 GATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAGTTTGAGACCTTCTACACC 180128 ||||| || |||||| || | ||||| ||||| || || ||||| || || ||||| Sbjct 43618 GATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACT 43559 Query 180129 AAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCACCAGTTGATCAACCACAT 180188 || || |||||||| |||||||| | ||||| ||| ||||| | ||||| || ||| Sbjct 43558 AAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCAT 43499 Query 180189 GAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAATGC 180232 || | ||||||||||| || ||||| ||| | || || || Sbjct 43498 GAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGC 43455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605994525511200