Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1886 149 9e-31 seq1948 116 5e-21 >seq1886 Length=1372085 Score = 149 bits (164), Expect = 9e-31 Identities = 243/343 (71%), Gaps = 8/343 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || || || || || ||||||||||||| || | |||||| ||||| || || Sbjct 694647 GCATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAG 694588 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| ||||| | ||| ||||||||||| ||||| |||||| | || ||||||| Sbjct 694587 CCCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGC-GCAAAAACTCCCTGAAAAGA 694529 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTA 39794 | || || || || || || || | | ||||||| | | || | || | | | Sbjct 694528 AAATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCACTGTCGA 694469 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 |||| || | ||||| ||||| ||| | || ||||| || || || || ||||| | Sbjct 694468 TCCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTGA 694409 Query 39855 AGAGATAATGTTTTTCATCA-CT--ATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | || || | ||| ||| || |||||||| || | || | |||| ||| |||| Sbjct 694408 AAAG--TCTGCTCTTC-TCAGCTTGATCTTTAATGTACGCCTCCAACAACAAACTGTACA 694352 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAA 39954 ||||||| || ||||| ||||| || ||||| |||||||| || Sbjct 694351 TTTCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAA 694309 >seq1948 Length=2296919 Score = 116 bits (128), Expect = 5e-21 Identities = 169/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 39725 CCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTA 39784 || |||||||| || ||||| || || || || | || |||||| || | ||| | Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | || ||||| ||| | ||||| || |||||||| | ||||| || || ||||| Sbjct 1731815 GCACTGTGGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTTTCA 1731874 Query 39845 ATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 || || || ||||| || ||| || || |||||| | |||| || | | | | Sbjct 1731875 ATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGTAAA 1731934 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGC 39963 || ||||| || || || |||||||| || || |||||||||||||| || |||||| Sbjct 1731935 CTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTTGC 1731993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686891713143600