Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1886 111 1e-19 seq1774 96.9 3e-15 seq1948 87.8 1e-12 >seq1886 Length=1372085 Score = 111 bits (122), Expect = 1e-19 Identities = 234/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || || || || || || || ||||| || |||||||||||| | || | Sbjct 694309 TTCTACGGATTCCAGATAGCTATTGAGAACATTCACTCAGAAATGTACAGTTTGTTGTTG 694368 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || ||||||| |||||| |||||| || | || ||||| || || || || Sbjct 694369 GAGGCGTACATTAAAGATCAAGCTGAGAAGAGCAGACTTTTCAATGCCATTGAGACCATA 694428 Query 44063 CCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 ||| ||| | | || || |||||||| || |||||||| | || || Sbjct 694429 CCTTGCGTTGCTAGG-AAGGCTGACTGGGCTCTAAAATGGATCGACAGTGCTGGGAGCTT 694487 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA-GGATCGTTTG 44180 || ||| || | | || || || || || || |||||||||||| ||| |||| Sbjct 694488 TGCAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGGGAGTTTTTG 694547 Query 44181 CGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGT 44240 | ||||| |||||| | ||||| ||||| | ||||| ||| | |||||||| || || Sbjct 694548 C-GCCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACGTTTTCCAACGAAC 694606 Query 44241 TAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | || || ||||| ||| | || ||||||||||| ||| || Sbjct 694607 TCATCTCACGAGATGAGGGCCTGCACTGCGATTTTGCATGCCTG 694650 >seq1774 Length=893538 Score = 96.9 bits (106), Expect = 3e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || ||||||||||| ||||| || |||||||| || || ||||||||||| | ||| | Sbjct 739045 TTCTATGGGTTTCAGATTGCGATTGAAAATATCCACTCAGAAATGTACAGCTTGCTGTTG 738986 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || ||||||| || ||| | ||||||||| || | || |||||||| || || | Sbjct 738985 GAGGCGTACATAAAGGATCAGTCTGAGAAGCATAGACTTTTCAATGCGATTGAGACTATC 738926 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT 44103 || |||| | | ||||| || ||||| || |||||||| Sbjct 738925 CCGTGCG-TCACTAGGAAAGCCGAATGGGCTCTCAAATGGAT 738885 >seq1948 Length=2296919 Score = 87.8 bits (96), Expect = 1e-12 Identities = 118/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || ||||| |||||||| ||||| || || || || ||||||||| | ||| | Sbjct 1731984 TTCTACGGATTTCAGATTGCCATCGAAAACATACACTCTGAGATGTACAGTTTACTGTTG 1731925 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || | |||||||||||| |||||| |||| | || || || || ||||| || Sbjct 1731924 GAGGCATACATCAAAGATCATGCCGAGAAAAATCGGCTCTTCAACGCCATTGAAACCATA 1731865 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT 44103 || || | | | | |||||||| ||||| || |||||||| Sbjct 1731864 CCATGTG-TCACCAAGAAAGCAGAATGGGCTCTGAAATGGAT 1731824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397446360449950