Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1794 138 1e-27 seq1979 102 1e-16 seq1945 95.1 2e-14 seq1886 91.5 2e-13 seq1833 86.0 8e-12 seq1884 84.2 3e-11 >seq1794 Length=856596 Score = 138 bits (152), Expect = 1e-27 Identities = 310/458 (68%), Gaps = 16/458 (3%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 |||||| || | |||||| || || ||||||||||| || ||||||||||| ||| || Sbjct 305176 GTAGATATTCGATGTGTAAGGCTCGAAGCATTCATTGTTGCCCAAGATTTGACTGGTTGA 305117 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCT---CCTTGATGCG 110823 ||||| ||||| || |||| | |||| |||||| | ||| |||| | | ||||| Sbjct 305116 TGCTGTGGGCATGGGAGCCAAAAGAAGAGAGTTACGCACACCGTTCTTAGCAATCATGCG 305057 Query 110824 TTCCTTGAGAACATCCCAGTCGTA-GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACT 110882 | | | | |||||||||| | ||||| || || | | |||||||| || | Sbjct 305056 T---CTCAAAGCATCCCAGTCCCATCTTGAGGAGGGCTTGA-CATCCCACATATCCGGTT 305001 Query 110883 GAAGCA-CCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 |||| | |||||| | ||| | || ||| | ||||| ||| ||| | || | Sbjct 305000 GAAGGAGTCCCTTGCTA-ATAGGACATCCATCATACGTTTCGTAGACACCCTCCTCTGCT 304942 Query 110942 GCCAATTCACAGCTCGCCTCCAGGGATGCGTG---ATACATGGTTTCAAAGATACGAGCA 110998 |||||||| || | | ||| |||||| || ||||| ||||| ||| Sbjct 304941 GCCAATTCGCATGAGGTCCTCAG---TGCGTGGTAGTATATGGTCTCAAATATATCTCTG 304885 Query 110999 TTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCG 111058 || | || || ||| || || |||||||||| || || ||| || | || || Sbjct 304884 TTGAGCTTCTGGGCCTCTTCAGAATCAAATGGCATGCCAAGCAGAATGAAGGCGTCAGCA 304825 Query 111059 AGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA 111118 || ||||| || || | ||||||||| | || ||||| || || ||| ||||| ||| Sbjct 304824 AGGCCTTGCACTCCGAGACCAATAGGACGATGGCGCATGTTCGATCTTCTCGCAGCCTCG 304765 Query 111119 ACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATT 111156 ||||| ||| | ||| || || | || ||||||||| Sbjct 304764 ACGGGGTAATAGTTTACATCGATAATTCTGTTTAGATT 304727 Score = 105 bits (116), Expect = 8e-18 Identities = 317/480 (66%), Gaps = 11/480 (2%) Strand=Plus/Minus Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGG 111528 |||||||| |||||||| |||||| | || || | || ||||| |||| | || Sbjct 303990 GTGTAGAGCTTCTCAAACTCTTCACCC-CAGCAATCTGCCAGTCCTGGAGCCTCATTGGG 303932 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 ||||||||||||||| ||| || | || || |||||||||||||||||||||| Sbjct 303931 GCAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCA 303872 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CT 111647 ||| | || ||||||| | || | || || | || || || || ||| | Sbjct 303871 CAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATT-CTTCCTAAGAT 303813 Query 111648 CAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT-- 111705 | || | || | ||||| || ||||| ||||| ||||||| |||| || ||||| Sbjct 303812 CCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCC 303753 Query 111706 --TCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGA 111763 | | || ||| | || | || || || |||||| | || ||||| | | ||| || Sbjct 303752 TCTTGCCG-CCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGG 303694 Query 111764 ATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTCACATC 111822 || || |||| || || ||||| || ||||| || | | | || | | || Sbjct 303693 ATGATCCCATTAGAAGTCCCGTTTGTGCCACGAAT-GTAGCTGCCAGTAGCACGGATATT 303635 Query 111823 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 111882 ||| | || ||||| || ||||| |||| || ||||||||| | ||||| Sbjct 303634 ATGAACTGACAAACCAATTCCACCAGCTGACTTGCTAATAACAGCACACTCCTTCAGAGT 303575 Query 111883 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 111942 | |||||||| | || ||| | ||| || | ||||||||||||| || ||| Sbjct 303574 GTCGTAGATACCCTCAATGCTGTCGCCTTTGGTGCATACAAGGAAGCAACTGCTCAGCTG 303515 >seq1979 Length=3181686 Score = 102 bits (112), Expect = 1e-16 Identities = 248/372 (67%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || ||||||||||| ||||| | || ||||| || || |||| || || ||| || | Sbjct 1436043 AAACCATCCATCTCTGTGAGCAGCTGGTTAATGGTCTGCTCTCGTTCGTCGTTTCCT--C 1435986 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || |||| | ||| | || || |||||||||||||| ||||| || || | Sbjct 1435985 CTCCCATACCGGCACCTCTCTGCCTTCCAACGGCATCAATCTCATCGATGAAAACGATGC 1435926 Query 11658 ATGGTTGATTTTCGCG--GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 | || | ||||| ||| |||| || | ||| ||||| | || |||||||| Sbjct 1435925 AAGG--GGCCTTCGCTTTGGCCTTTTCGAACAAATCACGAACACGGGAAGCTCCCACACC 1435868 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||| | || || || | | ||| | ||| || |||||||||| | || || Sbjct 1435867 AACAAAGAGTTCGACGAATTCGGAGGCTGCGCATGAGAAGAATGGGACACCAGCCTCTCC 1435808 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 | | |||| ||||| | |||||||| || || || || |||| || || Sbjct 1435807 GGAAACAGCTCTTGCGAGCAAAGTCTTTCCTGTTCCAGGTGGGCCGACGAGCAGACATCC 1435748 Query 11836 TCGGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAAT 11895 ||| ||||| ||||| || ||| | ||||| | ||| | ||||| |||| Sbjct 1435747 CTTGGGAATCTTAGCACCGAGGGCAGTGTATTTGTCGGGGTTCTTCAAGAAATCGACAAC 1435688 Query 11896 CTCTTCAAGTTC 11907 ||||| ||||| Sbjct 1435687 CTCTTGTAGTTC 1435676 >seq1945 Length=2262169 Score = 95.1 bits (104), Expect = 2e-14 Identities = 250/380 (66%), Gaps = 4/380 (1%) Strand=Plus/Minus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || || |||||||| || || | ||| ||||| || || || | |||||||||| || | Sbjct 521460 AAACCGTCCATCTCTGTAAGCAGTTGGTTAATGGTCTGCTCCCGCTCATCATTTCCT--C 521403 Query 11600 ATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | ||| || || | | ||| | ||||| |||||||||||||| |||||||| || | Sbjct 521402 CTCCCATACCGGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATGAAGACGATGC 521343 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || || | ||| | || || | ||||| || | || |||||||| | Sbjct 521342 AAGGAGCCTTAGCCTTGGCCTTCTCGAACAAGTCGCGGACACGAGAAGCTCCCACACCGA 521283 Query 11718 CAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCG 11777 | || | || || || | || ||| | ||| || ||| || ||| | || || | Sbjct 521282 CGAAGAGTTCAACGAATTCTGAGGCTGCGCATGAGAAGAAAGGAACACCGGCCTCTCCGG 521223 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || | ||||| || |||||||| || || || ||| |||| | || Sbjct 521222 ACACAGCCCTTGCGAGAAGAGTCTTTCCTGTTCCGGGAGGACCGACGAGCAAACATCCCT 521163 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 ||| ||||||||||| | ||| | || || | ||| ||||||||||||| | Sbjct 521162 TGGGAATCTTGGCACCTAGGGCTGTGTATTTGTCAGGGTTCTTCAGAAAATCCACAACTT 521103 Query 11898 CTTCAAGTTCATCTTTGGCC 11917 ||| ||| ||| |||||| Sbjct 521102 CTTGAAGCTCAAGCTTGGCC 521083 >seq1886 Length=1372085 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/273 (68%), Gaps = 5/273 (2%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| || ||||||||||| || || ||||| || || || || ||| Sbjct 694643 GCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGCCCT 694584 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| ||||| | |||||| | |||| | || ||||| || ||| || ||||| || Sbjct 694583 GGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAAATC 694524 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAAC 122838 ||||| || || || || || | | | || || ||| | || | || || | | Sbjct 694523 CCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAG-CACTG--TCGATC 694467 Query 122839 CATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC-TTCAAA 122897 ||||| | ||||| | |||||| | ||| || |||| || | ||||| || ||| Sbjct 694466 CATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTGAAA 694407 Query 122898 TAACTGCTTCTTTTCAGATCCATCCTTAATGTA 122930 |||| |||| |||| | ||| |||||||| Sbjct 694406 AGTCTGC-TCTTCTCAGCTTGATCTTTAATGTA 694375 >seq1833 Length=1020455 Score = 86.0 bits (94), Expect = 8e-12 Identities = 193/287 (67%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 11450 CGATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCC 11509 |||||||| ||||| || || | | || ||||||||||||| | | || || || Sbjct 229287 CGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGTAGCA 229346 Query 11510 GCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTA 11569 |||||||| | || || || | ||||| |||||||| || || || | || || Sbjct 229347 GCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTGGTTC 229406 Query 11570 ATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGTTGCTTGCCC 11626 | |||||||||| ||||| |||| | |||| |||| || | |||| || Sbjct 229407 AAGGTTTGTTCTCGTTCATC-GTTGCCACC--ACCAATGCCAGTACCCCTTTGCCGTCCG 229463 Query 11627 ACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 11686 || ||||| ||||| || | ||||||||||| || ||| || ||| | | ||| Sbjct 229464 ACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTTGAAG 229523 Query 11687 AGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || || || || | ||||| || || || |||||||| || || Sbjct 229524 AGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1884 Length=1382193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 9285 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 9344 || ||||||||| | || || ||||||||||| || || || |||||||| || || Sbjct 4532 AACTACCGCGAGGCGTATGGCATGTTTGCGTGCAATGGCATTCTGTTCAACCACGAGTCG 4591 Query 9345 CCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTACCGAG-GGTATCAAACAAATCAT 9403 || | |||| | |||| || |||| |||||||| |||| | |||| | |||| Sbjct 4592 CCCCGCAGAGGCGAGAACTTCGTAACCAGGAAGATTA-CGAGAGCTATCGGGCGCATCAA 4650 Query 9404 GAAGGGTGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGAGAGAGATTGGGGTC 9462 | ||| | || || | || || |||| ||| | || ||| | | || ||||| Sbjct 4651 GGTGGGGCTACAGAAG-AAACTGTATCTGGGCAACCTGAAGGCGTCGCGCGACTGGGGGT 4709 Query 9463 ACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAAT 9522 ||| |||||| ||||| | |||||||| ||||| || ||||| | ||||||| | Sbjct 4710 TCGCAGGGGACTACGTTGAGGGAATGTGGCTGATGCTGCAGCAAGACAAGCCCGACGACT 4769 Query 9523 ATGT 9526 | || Sbjct 4770 ACGT 4773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628016377704000