Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1794 118 1e-21 seq1886 93.3 5e-14 seq1833 89.7 6e-13 seq1948 84.2 3e-11 >seq1794 Length=856596 Score = 118 bits (130), Expect = 1e-21 Identities = 227/333 (68%), Gaps = 5/333 (2%) Strand=Plus/Minus Query 118944 GTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGG 119003 |||||||| ||||||||||||||| | |||| || ||||| |||| || ||| Sbjct 303990 GTGTAGAGCTTCTCAAACTCTTCACCCCAGCAATCTGCCAGTCCTGGAGCCTCATTGGGG 303931 Query 119004 CAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 ||||| ||||||||| ||| ||| | || || ||||||| |||||||| ||||| Sbjct 303930 CAGAAAAGAGACCATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCAC 303871 Query 119064 AGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCC 119123 || | |||| ||||| ||| | | ||| || | ||| ||||| | | ||| Sbjct 303870 AGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAGATCC 303811 Query 119124 AAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC-- 119181 | | || | ||||| || |||||||| ||||| || | |||| | ||||| | Sbjct 303810 AGCCAATCGAATATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCCTC 303751 Query 119182 --GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAAT 119239 | || ||| |||||| || |||| || ||| | || ||||| | | ||| || || Sbjct 303750 TTGCCG-CCACCCTGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGGAT 303692 Query 119240 GATACCATCGGATTGGCCATTTGTCCCCCGAAT 119272 ||| |||| || || ||||| || ||||| Sbjct 303691 GATCCCATTAGAAGTCCCGTTTGTGCCACGAAT 303659 Score = 104 bits (114), Expect = 3e-17 Identities = 303/457 (66%), Gaps = 16/457 (4%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||||||| | ||||| ||||| ||||| |||||||| ||||||||||| || || Sbjct 305175 TAGATATTCGATGTGTAAGGCTCGAAGCATTCATTGTTGCCCAAGATTTGACTGGTTGAT 305116 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC---CTTTTCCCTAATGCGT 118298 |||||||||||||| |||| ||||| |||||| | ||| ||| | | |||||| Sbjct 305115 GCTGTGGGCATGGGAGCCAAAAGAAGAGAGTTACGCACACCGTTCTTAGCAATCATGCGT 305056 Query 118299 TCCTTGAGAGCGTCCCAGTCGTA-GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 | | ||| |||||||| | ||||| | || | | ||||||||| || Sbjct 305055 ---CTCAAAGCATCCCAGTCCCATCTTGAG-GAGGGCTTGACATCCCACATATCCGGTTG 305000 Query 118358 GAGGA-TACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 |||| | ||||| | || |||| ||| | || || || ||||| | | | Sbjct 304999 AAGGAGTCCCTTGCTA-ATAGGACATCCATCATACGTTTCGTAGACACCCTCCTCTGCTG 304941 Query 118417 CCAATTCG---GAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 |||||||| ||| | |||| || || || || || || ||||| || | Sbjct 304940 CCAATTCGCATGAGGT--CCTC-AGTGCGTGGTAGTATATGGTCTCAAATATATCTCTGT 304884 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 | | || |||||| || |||||||| | | | || ||| || | || || | Sbjct 304883 TGAGCTTCTGGGCCTCTTCAGAATCAAATGGCATGCCAAGCAGAATGAAGGCGTCAGCAA 304824 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCA 118593 | ||||| || ||||| ||||| || ||||| | ||| || || | | || | ||| | Sbjct 304823 GGCCTTGCACTCCGAGACCAATAGGACGATGGCGCATGTTCGATCTTCTCGCAGCCTCGA 304764 Query 118594 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630 |||| ||| | || |||||||| || |||||||| Sbjct 304763 CGGGGTAATAGTTTACATCGATAATTCTGTTTAGATT 304727 >seq1886 Length=1372085 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| || ||||| || || ||||||||||| || || || || ||| Sbjct 694643 GCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGCCCT 694584 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| ||||| | |||||| | ||| || || || ||||| || || ||||| ||| Sbjct 694583 GGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGCGCAAAAACTCCCTGAAAAGAAAATC 694524 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||| || || ||||| || | || | ||| |||||| Sbjct 694523 CCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAG 694485 >seq1833 Length=1020455 Score = 89.7 bits (98), Expect = 6e-13 Identities = 195/291 (67%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 14059 CTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGT 14118 || ||||||||||||||| || || | | || | |||||||||||| | ||| || Sbjct 229283 CTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGT 229342 Query 14119 CGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTG 14178 || || || || | | || || | | ||||| |||||||| || |||| ||| || Sbjct 229343 AGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTG 229402 Query 14179 ATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTGCGTTGCTT 14235 || | ||||||||| |||||||| || || |||| || | || | |||| Sbjct 229403 GTTCAAGGTTTGTTCTCGTTCATCGTTGCCA---CCACCAATGCCAGTACCCCTTTGCCG 229459 Query 14236 ACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC 14295 ||||| || || || || || | || || ||||| || ||| || ||| | Sbjct 229460 TCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTT 229519 Query 14296 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 |||| || || |||| | ||||| || ||||| |||||||| || || Sbjct 229520 GAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1948 Length=2296919 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||| || || || |||||||||||||| || || ||| Sbjct 1731518 GCAAAATCGCAGTGTAAGCCCTCATCTCGTGAAATGAGTTCATTCGAAAAAGTAAGCCCT 1731577 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAA 130116 |||||||| |||| |||||||| ||| ||||| |||||||| Sbjct 1731578 GGCATGAGCCCCCTCTTCTTCAGCCAAAAAATGGCACAAAA 1731618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618419816424400