Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1794 167 3e-36 seq1945 125 8e-24 seq1979 120 4e-22 seq1980 113 5e-20 seq1833 111 2e-19 seq1886 107 2e-18 seq1884 84.2 3e-11 seq1871 84.2 3e-11 >seq1794 Length=856596 Score = 167 bits (184), Expect = 3e-36 Identities = 317/458 (69%), Gaps = 18/458 (4%) Strand=Plus/Plus Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || ||||||||| |||| ||| ||| | ||||||||| ||| |||| | | ||| || Sbjct 304727 AATCTAAACAGAATTATCGATGTAAACTATTACCCCGTCGAGGCTGCGAGAAGATCGAAC 304786 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | || ||||| ||||||||||| || || || || || || | |||||||| | Sbjct 304787 ATGCGCCATCGTCCTATTGGTCTCGGAGTGCAAGGCCTTGCTGACGCCTTCATTCTGCTT 304846 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 || |||||||||| || || || || | |||| |||||||||||||| Sbjct 304847 GGCATGCCATTTGATTCTGAAGAGGCCCAGAAGCTCAACAGAGATATATTTGAGACCATA 304906 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCA---GAGTTGGCAGAGGTTGATGGTCCATATGAA 105385 || || ||| | |||| || ||| || ||||||| | || ||| || ||| Sbjct 304907 TACTACCACGCAC-TGAG--GACCTCATGCGAATTGGCAGCAGAGGAGGGTGTCTACGAA 304963 Query 105386 ACCTTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA 105444 || | ||| || | ||| || |||||| | |||||| ||||||||||| | | Sbjct 304964 ACGTATGATGGATGTCC-TATTAGCAAGGGACTCCTTCAACCGGATATGTGGGATGTCAA 305022 Query 105445 GACCAAGCTTCA--CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGG---AGAAGGGT 105499 | || | ||| | |||||||| ||| | | |||||| | | |||| ||| Sbjct 305023 GCCC--TCCTCAAGATGGGACTGGGATGCTTT---GAGACGCATGATTGCTAAGAACGGT 305077 Query 105500 CTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 105559 | |||||| ||| || ||||||| ||||| ||||| || ||| ||||||||||| Sbjct 305078 GTGCGTAACTCTCTTCTTTTGGCTCCCATGCCCACAGCATCAACCAGTCAAATCTTGGGC 305137 Query 105560 AATAATGAATGCTTTGAACCCTACACGACGAACATCTA 105597 || ||||||||||| || || ||||| |||| ||||| Sbjct 305138 AACAATGAATGCTTCGAGCCTTACACATCGAATATCTA 305175 >seq1945 Length=2262169 Score = 125 bits (138), Expect = 8e-24 Identities = 249/364 (68%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||| ||||||||||| | ||||||||||| || || ||||| |||||||| || | Sbjct 521460 AAACCGTCCATCTCTGTAAGCAGTTGGTTAATGGTCTGCTCCCGCTCATCATTTCCT--C 521403 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| || || | | ||| | |||||||||||||||||||| ||||||||||||| Sbjct 521402 CTCCCATACCGGCTCCTCTCTGCCTACCCACGGCATCAATCTCATCGATGAAGACGATGC 521343 Query 9732 ATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 | || || | || || || | || || ||||| || |||||||| | Sbjct 521342 AAGGAGCCTTAGCCTTGGCCTTCTCGAACAAGTCGCGGACACGAGAAGCTCCCACACCGA 521283 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9851 | || | || || || | || ||| | ||| || ||| || ||| | || || | Sbjct 521282 CGAAGAGTTCAACGAATTCTGAGGCTGCGCATGAGAAGAAAGGAACACCGGCCTCTCCGG 521223 Query 9852 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 9911 | || | |||||||||||||| || || || || ||| |||| | || | | Sbjct 521222 ACACAGCCCTTGCGAGAAGAGTCTTTCCTGTTCCGGGAGGACCGACGAGCA-AACATCCC 521164 Query 9912 GT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 | ||||||||||| || | |||| | ||||| | ||| ||||||||||||| | Sbjct 521163 TTGGGAATCTTGGCACCTAGGGCTGTGTATTTGTCAGGGTTCTTCAGAAAATCCACAACT 521104 Query 9971 TCTT 9974 |||| Sbjct 521103 TCTT 521100 >seq1979 Length=3181686 Score = 120 bits (132), Expect = 4e-22 Identities = 250/366 (68%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||||||||| | || |||||||| || || || ||||| || || || | Sbjct 1436043 AAACCATCCATCTCTGTGAGCAGCTGGTTAATGGTCTGCTCTCGTTCGTCGTTTCCT--C 1435986 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | ||| || |||| | ||| |||| ||||||||||||||||| ||||| ||||||| Sbjct 1435985 CTCCCATACCGGCACCTCTCTGCCTTCCAACGGCATCAATCTCATCGATGAAAACGATGC 1435926 Query 9732 ATGGTTGATTTTCGC--GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACC 9789 | || | ||||| || ||| || | ||| || ||||| || |||||||| Sbjct 1435925 AAGG--GGCCTTCGCTTTGGCCTTTTCGAACAAATCACGAACACGGGAAGCTCCCACACC 1435868 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 |||||| | || || || | | ||| | ||| || ||| |||||| || || || Sbjct 1435867 AACAAAGAGTTCGACGAATTCGGAGGCTGCGCATGAGAAGAATGGGACACCAGCCTCTCC 1435808 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 | || |||| ||||| | |||||| || || || || || |||| | | || | Sbjct 1435807 GGAAACAGCTCTTGCGAGCAAAGTCTTTCCTGTTCCAGGTGGGCCGACGAGCA-GACATC 1435749 Query 9910 TCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 | | |||||||| || || || |||| | || || | ||| | ||||| |||| Sbjct 1435748 CCTTGGGAATCTTAGCACCGAGGGCAGTGTATTTGTCGGGGTTCTTCAAGAAATCGACAA 1435689 Query 9969 TTTCTT 9974 |||| Sbjct 1435688 CCTCTT 1435683 >seq1980 Length=3210214 Score = 113 bits (124), Expect = 5e-20 Identities = 157/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||||||||| || || || | || ||||||| |||||| | | ||| || Sbjct 923058 CTGACGATCAAAGCGACCGGGCCGCAGCAAAGCAGCATCAAGTATATCAGCCCTATTGGT 923117 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || || |||| || |||||| | | ||||| |||||||| ||||||| || || Sbjct 923118 TGCAGCAATTACAATAACACCTGTATTACCCTCAAATCCATCCATTTCTGTCAGGAGCTG 923177 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTT 9696 ||| | |||||||| || || ||||| | |||| |||| || | |||| Sbjct 923178 GTTCAAGGTTTGTTCTCGCTCGTCATT---TCCACCACCAATGCCAGTACCCCTTTGCCG 923234 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 9735 ||| || ||||| ||||| || | ||||| ||||| || Sbjct 923235 TCCGACAGCATCTATCTCGTCCACAAAGACAATGCAAGG 923273 >seq1833 Length=1020455 Score = 111 bits (122), Expect = 2e-19 Identities = 201/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Plus Query 9520 CTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGT 9579 || ||||||||||||||| || || | | || |||||||||||||| | | || || Sbjct 229283 CTGACGATCAAAGCGACCGGGTCGCAATAAAGCAGCATCAAGGATATCAGCTCTGTTGGT 229342 Query 9580 CGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTG 9639 || || || || | || |||||| | ||||| |||||||| ||||||| || || Sbjct 229343 AGCAGCAATAACTATAACACCTGTGTTGCCCTCAAATCCATCCATTTCTGTCAGGAGCTG 229402 Query 9640 GTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTT 9696 ||| | |||||||| |||||||| || || | |||| |||| || | |||| Sbjct 229403 GTTCAAGGTTTGTTCTCGTTCATCGTT-GCCACC--ACCAATGCCAGTACCCCTTTGCCG 229459 Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC 9756 ||| || ||||| ||||| || | ||||| || || || ||| || || | Sbjct 229460 TCCGACAGCATCGATCTCGTCCACAAAGACAATACAAGGAGCATTCTCTTTGGCTTTCTT 229519 Query 9757 AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 9807 ||||| || ||||| ||| || || || || || |||||||| || || Sbjct 229520 GAAGAGGTCACGTACTCGCGATGCACCAACTCCCACGAACATCTCGACGAA 229570 >seq1886 Length=1372085 Score = 107 bits (118), Expect = 2e-18 Identities = 191/274 (70%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 94683 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAA-GCCATCCAAACAGTTCCGT 94741 ||| ||||| ||| |||||||||| |||| ||| || ||||| | || | || | Sbjct 694374 GTACATTAAAGATCAAGCTGAGAAGA-GCAGACTTTTCAATGCCATTGAGACCATACCTT 694432 Query 94742 GTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTG 94801 | || | ||| || || |||||| | || ||| | || || | | | | |||| Sbjct 694433 GCGTTGCTAGGAAGGCTGACTGGGCTCTAAAATGGATCGA--CAGTGCTGGGAGC-TTTG 694489 Query 94802 CTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG 94861 | ||| || || | || || || || || ||||| || ||||| || || || |||| Sbjct 694490 CAGAGAGAATCCTGGCTTTCGCCTGCGTCGAGGGGATTTTCTTTTCAGGGAGTTTTTGCG 694549 Query 94862 CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTA 94921 | || | ||||||||||||| ||||||| |||||||| || || |||||||| || | Sbjct 694550 CCATCTTTTGGCTCAAGAAGAGAGGTCTTATGCCAGGGCTTACGTTTTCCAACGAACTCA 694609 Query 94922 TCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| || || ||||| || ||| || ||||| Sbjct 694610 TCTCACGAGATGAGGGCCTGCACTGCGATTTTGC 694643 >seq1884 Length=1382193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 168/244 (69%), Gaps = 4/244 (2%) Strand=Plus/Plus Query 7361 AATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAACCATGAATCA 7420 || ||||||||| | || || ||||||||||| || || || |||||||| || || Sbjct 4532 AACTACCGCGAGGCGTATGGCATGTTTGCGTGCAATGGCATTCTGTTCAACCACGAGTCG 4591 Query 7421 CCGAGACGAGGTGCAGACTTTGTCACAAAGAAGATTACCGAG-GGTATCAAACAAATCAT 7479 || | |||| | |||| || || | |||||||| |||| | |||| | |||| Sbjct 4592 CCCCGCAGAGGCGAGAACTTCGTAACCAGGAAGATTA-CGAGAGCTATCGGGCGCATCAA 4650 Query 7480 GAAGGGTGAAAAGGAGTTCATTGAAT-TGGGTAACATAAACGCGGCGAGAGATTGGGGTC 7538 | ||| | || || | || || |||| ||| | || ||| || | || ||||| Sbjct 4651 GGTGGGGCTACAGAAG-AAACTGTATCTGGGCAACCTGAAGGCGTCGCGCGACTGGGGGT 4709 Query 7539 ACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGCCGACGAAT 7598 ||| |||||| ||||| | |||||||| ||||| || ||||| | ||||||| | Sbjct 4710 TCGCAGGGGACTACGTTGAGGGAATGTGGCTGATGCTGCAGCAAGACAAGCCCGACGACT 4769 Query 7599 ATGT 7602 | || Sbjct 4770 ACGT 4773 >seq1871 Length=1245209 Score = 84.2 bits (92), Expect = 3e-11 Identities = 315/485 (65%), Gaps = 18/485 (4%) Strand=Plus/Plus Query 9536 CCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACA 9595 || |||||||| | || | || || |||||| | | || || || || ||||||| Sbjct 820232 CCAGGACGAAGCAAGGCAGCGTCGAGAATATCAGCCCTGTTGGTGGCAGCAATGACAATC 820291 Query 9596 ATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTT 9653 | ||| |||||| || | ||||| |||||||| ||||| | || || | || || | Sbjct 820292 ACACCAGTGTTTCCTT--CGAAACCGTCCATCTCCGTCAACAACTGATTCAACGTCTGCT 820349 Query 9654 CCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAAT 9711 | || |||||||| || | | | | |||| | | || |||| ||||||||||| Sbjct 820350 CACGCTCATCATTGCCT--CCTCCAATTCCAGTTCCTCTCTGTCTTCCAACGGCATCAAT 820407 Query 9712 CTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCC 9767 |||||| | || || ||||| || || |||||| | ||| || || |||| Sbjct 820408 CTCATCCACAAACACAATGCAGGGAGCATTCTCTTTCGC---CTTCTTGAACAAG-TCCC 820463 Query 9768 GTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-G 9826 ||||| || ||||| || || ||||| ||||| || | | | | | || | | Sbjct 820464 TCACACGGGAAGCTCCCACTCCCACGAACATTTCCACGAACTCAGACCCAG-AGATGGAG 820522 Query 9827 ATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCT 9886 | ||| || || || ||| || || ||||| || | |||||||| || ||||| Sbjct 820523 AAGAATGGTACTCCAGCTTCCCCAGCGATGGCCTTCGCCAATAGAGTCTTTCCGGTACCG 820582 Query 9887 GGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCA 9946 || || | || | | || ||| || || ||||| | | | |||||||| Sbjct 820583 GGTGGTCCAACCAGCAACACTCCCTTTGGGATTTTAGCGCCCACTGCTGTGAATCTCTCA 820642 Query 9947 GGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCA 10006 || |||| | || ||||||| || || || | ||||| |||| | ||| || Sbjct 820643 GGCCGCTTCAAGAACTCCACAACCTCCATGAAGTCTTGCTTGGCCTCGTCTACTCCCGCA 820702 Query 10007 ACATC 10011 ||||| Sbjct 820703 ACATC 820707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583246291387600