Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1794 104 3e-17 seq1925 91.5 2e-13 seq1774 89.7 6e-13 >seq1794 Length=856596 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||| ||||| || |||||||| | ||| || || || | | ||||| | Sbjct 303892 CATGAAAAGGTCTGGAATCCACAGACCATAGAATAGATCTCGAGCCCTATTTTCCTCCTT 303833 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 || || ||| | || || || | || | || ||||| ||||||||||||||||| Sbjct 303832 CCCATGATTCTTCCTAAGATCCAGCCAATCGAATATATCGGCATGCCACGGCTCCAGATA 303773 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||| ||||| | ||||| | ||||||||| ||||||| ||||||||| || |||| || Sbjct 303772 GATAGCGAAAGCGCCCTTCCTCTTGCCGCCACCCTGGTCGACGTACCGAGCTGTGTCATT 303713 Query 79563 GAAAACTCGGAGCATGGGCACGATGCC 79589 ||| || | | ||| || | ||| || Sbjct 303712 GAATACCCTCAACATCGGGATGATCCC 303686 >seq1925 Length=1847415 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 79054 AGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTG 79113 || || |||| |||||| ||||| |||||||| || || | || ||| | ||||| || Sbjct 480585 AGTGAAGCCAAGTTGCAGACGGCAGTCTCGTCAGGACTTGTAAACTCCACTATTTCGGTA 480644 Query 79114 CACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCG 79173 || | ||| || ||||||||||| || | || | |||||||||||| ||| ||||| Sbjct 480645 CAAAGATTGGAAGACTTGATGGTTCCCAGATTTTGCTGGTTGCTCTTTCTGTTGCAGGCA 480704 Query 79174 TCCTT 79178 ||||| Sbjct 480705 TCCTT 480709 >seq1774 Length=893538 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 |||||| | || |||||||| |||||| | ||||||||||| || || | |||||||||| Sbjct 738543 TTCTGTTCCATATTCTGGCTGAAAAAGAGGGGCCTCATGCCAGGGCTTACTTTCTCCAAC 738484 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 ||||| ||||| || || ||||| || || Sbjct 738483 GAGCTTATTTCACGAGATGAGGGTCTACA 738455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548511155445600