Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq1884 104 3e-17 seq1794 102 9e-17 >seq1884 Length=1382193 Score = 104 bits (114), Expect = 3e-17 Identities = 203/297 (68%), Gaps = 15/297 (5%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| |||| | |||||| | |||||| || | ||| | | |||| | || || Sbjct 4822 CGCCTCCTCCAGAAACTCCTCCACAGTGTGCGAGTCTTCTGTGGCCAGCACGTAGTCGTC 4763 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 ||| | ||||||| ||| |||||||| | | ||||||||| ||||| |||||| Sbjct 4762 GGGCTTGTCTTGCTGCAGCATCAGCCACATTCCCTCAACGTAGTCCCCTGCGAACCCCCA 4703 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCTTGG------CCGTCTTGTTCCA 124654 ||||||| || | |||||| || || | | | ||| || |||| | | Sbjct 4702 GTCGCGCGACGCCTTCAGGTTGCCCAGATACAGTTTCTTCTGTAGCCCCACCTTGATGCG 4643 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGA 124711 | ||| | | | |||||||| | || || || |||| | ||| || || Sbjct 4642 C-CCG--ATAGCTCTCGTAATCTTCCTGGTTACGAAGTTCTCGCCTCTGCGGGGC---GA 4589 Query 124712 CTCGTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTT 124768 |||||||||||||||||||||| | ||||||||||| || |||| |||||||||||| Sbjct 4588 CTCGTGGTTGAACAGAATGCCATTGCACGCAAACATGCCATACGCCTCGCGGTAGTT 4532 >seq1794 Length=856596 Score = 102 bits (112), Expect = 9e-17 Identities = 231/340 (68%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGT 53422 || || || |||||||| || || ||||||||||| || ||||| | ||||| Sbjct 303557 ATTGAGGGTATCTACGACACTCTGAAGGAGTGTGCTGTTATTAGCAAGTCAGCTGGTGGA 303616 Query 53423 ATCGGTATCCACTGCTCG-AACGTCCGTGCGAACGGCA-CACCAATCAAGGGGACGAACG 53480 || ||| | | | || || ||||||| | |||| | || || || || |||| Sbjct 303617 ATTGGTTTGT-CAGTTCATAATATCCGTGCTACTGGCAGCTACATTCGTGGC-ACAAACG 303674 Query 53481 GCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCA 53540 | | |||| ||| | || ||| | | || ||||| |||| || ||||||||| Sbjct 303675 GGACTTCTAATGGGATCATCCCGATGTTGAGGGTATTCAATGACACAGCTCGGTACGTCG 303734 Query 53541 ACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCG 53600 |||||||||| || ||| | ||||| | ||||| ||||| || ||||||||||| |||| Sbjct 303735 ACCAGGGTGGCGGCAAGAGGAAGGGCGCTTTCGCTATCTATCTGGAGCCGTGGCATGCCG 303794 Query 53601 ACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGA--TGCGCTGCCG 53658 | || | || | || || || | |||||| || | || || | | ||| || Sbjct 303795 ATATATTCGATTGGCTGGATCTTAGGAAGAATCATGGGAAGGAGGAAAATAGGGCT--CG 303852 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 || || || | |||||||||||| ||||| |||||| Sbjct 303853 AGATCTATTCTATGGTCTGTGGATTCCAGACCTTTTCATG 303892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547202388002000