Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq1990 580 1e-160 >seq1990 Length=122890 Score = 580 bits (642), Expect = 1e-160 Identities = 726/992 (73%), Gaps = 8/992 (1%) Strand=Plus/Minus Query 176113 TTTTGCCAGTGGGTCACCAATACAAACAACAGAATTTACGTTGGTTGGTTTGGTGTGCTC 176172 || ||| | ||||| |||| || | ||| | ||||| | || ||||| ||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 176173 ATGATTCCATGTCTGCTCACTGCTGCAGCATGT-TTTATCGTTGCATTTATTGCAGCACC 176231 |||||||| ||| | ||||| | | ||| ||||| |||| || |||||||| || Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTC-TGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 176232 ACCTGTCGATATCGACGGTATTCGCGAACCAGTAGCAGGATCTCTACTCTATGGAAACAA 176291 ||||| ||||| || ||||| || || || || | || ||||| || || |||||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 176292 CATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCAATCGGACTACACTTCTACCCAAT 176351 ||||||||| | || || |||| | || || ||||| | |||||||||||||| Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 176352 CTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGAGGACCATACCAACTCGTTGT 176411 |||||||| || | ||||| |||||||| ||||| || || || ||| | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 176412 ATTCCACTTCCTTATCGGTATCTCAGCTT---ACATGGGACGCCAATGGGAACTTAGTTA 176468 | |||||| | | ||| | ||||| ||||||| || | ||||||||||| || Sbjct 53933 TCTTCACTTCTTACTTGGTGT---AGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCTA 53877 Query 176469 CAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGAT 176528 | | |||| ||||||||||||||| ||||||||| || || || || | || || | Sbjct 53876 CCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTAC 53817 Query 176529 GGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGG 176588 || |||||| | |||| ||| | ||||||||| |||||||| ||||||||| | || Sbjct 53816 TGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGG 53757 Query 176589 CATTTCAGGTACATTCAACTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCA 176648 || || ||||| |||||||| ||| |||| |||||||| || |||||||| || ||||| Sbjct 53756 AATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCA 53697 Query 176649 CCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCA 176708 ||||||||| |||||||| ||||| ||||| || ||||| ||||| ||| || ||||| Sbjct 53696 CCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCA 53637 Query 176709 CGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTA 176768 || | || ||||| | | | || || || || || || || ||| Sbjct 53636 TGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGC 53577 Query 176769 CGGTTACAAATTCGGACAAGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTT 176828 |||||||| || || ||||| ||||| || |||||||| |||||||| ||||||||||| Sbjct 53576 AGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTT 53517 Query 176829 TGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCT 176888 |||| | | || ||||| || ||| || || ||||| | | | ||||||||| | Sbjct 53516 TGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTT 53457 Query 176889 TGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATT 176948 || || | || || || | |||||||| |||||| | ||| | |||| ||||| || Sbjct 53456 AGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTT 53397 Query 176949 CAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCC 177008 |||| | |||||||||||||||||||| ||||| | |||| ||| || ||| Sbjct 53396 CAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAA 53337 Query 177009 TACATGGGGAGATATCCTTAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAA 177068 || |||| || ||| | |||||||| ||||||||||||||||||||||| || ||||| Sbjct 53336 CACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 53277 Query 177069 TGCTCACAACTTCCCACTTGACCTTGCTGCTG 177100 |||||||||||||| || ||| | ||| ||| Sbjct 53276 CGCTCACAACTTCCCTCTAGACTTAGCTTCTG 53245 Score = 158 bits (174), Expect = 1e-33 Identities = 225/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 19308 CAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCGTATACACTATGAG 19367 || || ||||| || || | || || || ||| | | ||||| ||||| || | ||| Sbjct 102214 CAATACCCTTATGAAAAGTTAATTCCATCTGAGCGTTTTCGTGGACGTATTCATTTTGAA 102155 Query 19368 TTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTATCAATCTACCAGTG 19427 |||||||| ||||| |||||||| || ||||| | ||||| || || ||| |||| || Sbjct 102154 TTTGACAAATGTATTGCCTGTGAAGTATGTGTTCGTGTATGTCCAATTAATTTACCCGTT 102095 Query 19428 GTGGATTGGGTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAAATTATTCGATAGAC 19487 || ||||||| | || ||| | ||| || ||| || | | || |||| || || Sbjct 102094 GTTGATTGGGAATTAAAAAAAGATGTAAAAAAAAAACAATTGAAAAGTTATAGTATTGAT 102035 Query 19488 TTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAACAAACTGTCTATCC 19547 ||||||| ||||| || ||||| || || || || ||||| || ||||| ||| |||| Sbjct 102034 TTTGGAGTTTGTATATTTTGCGGAAATTGTGTTGAATATTGTCCTACAAATTGTTTATCT 101975 Query 19548 ATGACAGAAGAATATGAATTGGCTACATTTGACAGACATCAACTTAACTTTGATAACGTC 19607 ||||| |||||||||||| | | | | ||| | ||| | | || | |||| | | Sbjct 101974 ATGACTGAAGAATATGAACTTTCAATTTATGATCGTCATGATTTAAATTATGATCAAATT 101915 Query 19608 GCTCTTGGACGATTGCC 19624 ||| | |||||||| || Sbjct 101914 GCTTTAGGACGATTACC 101898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603479388076800