Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq1917 111 1e-19 seq1943 93.3 3e-14 seq1814 89.7 4e-13 seq1639 87.8 1e-12 seq1972 86.0 4e-12 >seq1917 Length=1730829 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||| | || ||||| || || |||| ||||| ||| || Sbjct 507446 ATGCAGATCTTTGTGAAGACTTTGACGGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 507505 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| || || ||||| || || | ||| ||| | Sbjct 507506 GACACTATCGACAAC--GTCAAAGCCAAGATTCAAGACAAGGAGGGCATACCGCCGGACC 507563 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||| || || || ||||| || | |||| ||| ||||||||| Sbjct 507564 AGCAAAGGCTCATCTTTGCAGGGAAGCAGTTGGAAGATGGTCGCACTTTGGCCGATTACA 507623 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || ||| ||| ||||| ||||| ||||| | ||||| || Sbjct 507624 ACATCCAGAAGGAGTCCACCTTGCACTTGGTGCTGCGTCTCCGTGGAGG 507672 Score = 107 bits (118), Expect = 1e-18 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || | || ||||| ||| || | || || || ||| | Sbjct 507902 ATGCAAATCTTTGTGAAGACGTTGACGGGGAAGACTATCACCTTGGAGGTGGAGAGCTCT 507961 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| || | | || || | | ||||| ||||| |||| || | Sbjct 507962 GACACGATTGACAA-CGTTAAGACGAAGATTCAA-GACAAGGAAGGCATTCCTCCCGATC 508019 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | ||||| ||||| ||||||||||| || | |||| |||| | || |||| Sbjct 508020 AGCAAAGGCTTATTTTCGCCGGCAAACAATTGGAGGATGGTCGCACCTTGGCAGACTACA 508079 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||||| || |||||||| || | || ||||| || ||| Sbjct 508080 ACATCCAAAAAGAATCAACCTTGCATTTAGTCCTACGATTGCGAGGTGGC 508129 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | || || ||| || || |||| ||||||||| | Sbjct 508130 ATGCAAATCTTTGTTAAAACCTTGACCGGTAAAACAATCACGCTTGAGGTCGAAAGCTCT 508189 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| || || ||||| ||||| ||||| ||||| || | Sbjct 508190 GACACAATTGACAAC--GTGAAGACGAAAATCCAAGACAAGGAAGGGATTCCGCCCGATC 508247 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || || ||||| || || ||||| || || | |||| | | | ||||||| Sbjct 508248 AGCAGCGTTTGATCTTTGCTGGTAAGCAATTAGAAGATGGCCGCACCCTTGCTGATTACA 508307 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| || || ||||| |||| ||||||||||| || || Sbjct 508308 ATATCCAAAAGGAATCGACCTTGCACCTGGTCTTGCGTTTGCGCGGAGG 508356 >seq1943 Length=2190071 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || ||||| || || ||||| ||||| | || || || ||| | Sbjct 1469844 ATGCAAATATTCGTCAAAACGCTGACGGGGAAGACGATTACGTTGGAAGTTGAGAGCTCA 1469903 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || || | | || || | | |||||||||||| |||| || | Sbjct 1469904 GATACTATTGATAA-CGTTAAGACGAAGATTCAA-GACAAAGAAGGTATTCCACCTGACC 1469961 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||||||||| || ||||| || | || | || ||||||||| Sbjct 1469962 AGCAACGATTGATTTTTGCCGGAAAGCAGTTGGAGGATGGGCGTACTCTGGCCGATTACA 1470021 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| | || |||| ||||| || | ||||| Sbjct 1470022 ACATTCAGAAGGAGTCCACGCTTCACCTGGTGTTGCGCCTGAGGGGCGG 1470070 >seq1814 Length=924488 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||| || | || ||||| ||||| | || || || ||| | Sbjct 463091 AATGCAGATTTTTGTGAAGACCTTGACAGGGAAGACGATTACTCTCGAGGTAGAGAGCTC 463150 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| || || ||| || || || || || | ||| || Sbjct 463151 GGACACAATTGATAAT--GTGAAGACAAAGATCCAGGATAAGGAGGGCATCCCGCCCGAC 463208 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| |||||||| ||||| |||||||| |||| |||| | | | || ||| Sbjct 463209 CAGCAGAGGTTGATTTTTGCAGGAAAGCAATTGGAAGACGGGCGCACCCTTGCTGACTAC 463268 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| || ||| || |||||| ||||| |||| ||| | || || Sbjct 463269 AACATCCAGAAGGAGTCAACCTTGCATCTGGTTCTGCGCTTGAGAGGTGG 463318 >seq1639 Length=407714 Score = 87.8 bits (96), Expect = 1e-12 Identities = 157/221 (71%), Gaps = 10/221 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||||||||| || ||||| ||||| | || ||||| ||| | Sbjct 34644 ATGCAGATCTTCGTGAAAACTCTGACGGGGAAGACAATTACCTTGGAGGTCGAGAGCTCG 34703 Query 27850 GA--CGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 || | || |||| ||||| || || | | || ||||| || || |||| || Sbjct 34704 GATACCATCGACAAC--GTCAAGACCAAGATTCAG--GACAAGGAGGGAATTCCTCCTGA 34759 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATT 27964 ||||| || |||||||| |||||||| || |||| || | |||| ||| | |||| | Sbjct 34760 CCAGCAGCGATTAATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACGCTCG-CCGACT 34818 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||||||||| || ||| || | || ||||| |||||| Sbjct 34819 ACAACATCCAGAAGGAGTCTACCCTTCACTTGGTGTTGCGT 34859 >seq1972 Length=2788724 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || ||||| || || | || || || ||| | Sbjct 1775072 ATGCAAATTTTTGTGAAGACGTTGACAGGGAAGACCATCACCCTGGAGGTGGAGAGCTCT 1775013 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| | || || | || || | | || ||||| || || |||| ||| Sbjct 1775012 GACACGATTGATAA-CGTGAAGACGAAGATTCAG--GACAAGGAGGGGATTCCTCCGGAC 1774956 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || || || ||||||||||| || | |||| | || |||||||| Sbjct 1774955 CAGCAGAGGTTGATCTTCGCAGGGAAACAATTGGAGGATGGTCGCACCCTGGCCGATTAC 1774896 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || ||| || ||||| ||||| Sbjct 1774895 AACATCCAGAAGGAGTCGACCTTGCACTTGGT 1774864 Score = 86.0 bits (94), Expect = 4e-12 Identities = 149/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || ||||| || || | || || || ||| | Sbjct 1798960 ATGCAAATTTTTGTGAAGACGTTGACAGGGAAGACCATCACCCTGGAGGTGGAGAGCTCT 1799019 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| | || || | || || | | || ||||| || || |||| ||| Sbjct 1799020 GACACGATTGATAA-CGTGAAGACGAAGATTCAG--GACAAGGAGGGGATTCCTCCGGAC 1799076 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || || || ||||||||||| || | |||| | || |||||||| Sbjct 1799077 CAGCAGAGGTTGATCTTCGCAGGGAAACAATTGGAGGATGGTCGCACCCTGGCCGATTAC 1799136 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||| || ||| || ||||| ||||| Sbjct 1799137 AACATCCAGAAGGAGTCGACCTTGCACTTGGT 1799168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || ||||| || || | || || || ||| | Sbjct 1775300 ATGCAAATTTTTGTGAAGACGTTGACAGGGAAGACCATCACCCTGGAGGTGGAGAGCTCT 1775241 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| | || || | || || | | || ||||| || || |||| ||| Sbjct 1775240 GACACGATTGATAA-CGTGAAGACGAAGATTCAG--GACAAGGAGGGGATTCCTCCGGAC 1775184 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || || || || |||||||| |||| |||| ||| | |||||| Sbjct 1775183 CAGCAGAGGTTGATCTTCGCAGGGAAGCAATTGGAGGACGGCCGCACTTTGGCTGATTAC 1775124 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || ||||| |||||| | | ||| | || ||| Sbjct 1775123 AACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTTAGGTTGAGGGGAGGC 1775073 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || ||||| || || | || || || ||| | Sbjct 1798504 ATGCAAATTTTTGTGAAGACGTTGACAGGGAAGACCATCACCCTGGAGGTGGAGAGCTCT 1798563 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| | || || | || || | | || ||||| || || |||| ||| Sbjct 1798564 GACACGATTGATAA-CGTGAAGACGAAGATTCAG--GACAAGGAGGGGATTCCTCCGGAC 1798620 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || || || || |||||||| |||| |||| ||| | |||||| Sbjct 1798621 CAGCAGAGGTTGATCTTCGCAGGGAAGCAATTGGAGGACGGCCGCACTTTGGCTGATTAC 1798680 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || ||||| |||||| | | ||| | || ||| Sbjct 1798681 AACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTTAGGTTGAGGGGAGGC 1798731 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||| || | || ||||| || || | || || || ||| | Sbjct 1798732 ATGCAAATTTTTGTGAAGACGTTGACAGGGAAGACCATCACCCTGGAGGTGGAGAGCTCT 1798791 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| | || || | || || | | || ||||| || || |||| ||| Sbjct 1798792 GACACGATTGATAA-CGTGAAGACGAAGATTCAG--GACAAGGAGGGGATTCCTCCGGAC 1798848 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || || || || || |||||||| |||| |||| ||| | |||||| Sbjct 1798849 CAGCAGAGGTTGATCTTCGCAGGGAAGCAATTGGAGGACGGCCGCACTTTGGCTGATTAC 1798908 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||| || ||||| |||||| | | ||| | || ||| Sbjct 1798909 AACATCCAGAAGGAGTCGACCTTGCACTTGGTTCTTAGGTTGAGGGGAGGC 1798959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355853769224730