Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1917 105 6e-18 seq1748 95.1 1e-14 seq1705 95.1 1e-14 seq1943 93.3 4e-14 seq1721 89.7 4e-13 seq1639 86.0 5e-12 seq1762 84.2 2e-11 >seq1917 Length=1730829 Score = 105 bits (116), Expect = 6e-18 Identities = 165/235 (70%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || ||||| || || | ||| || || ||||| |||||||| Sbjct 507904 CATGCCACCTCTCAGTCGCAACACTAAGTGCAAAGTGGATTCCTTCTGTATGTTATAATC 507845 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || ||| |||| || || || |||||||| ||||| || |||||||| |||| Sbjct 507844 CGCAAGAGTGCGTCCGTCCTCGAGTTGCTTGCCCGCGAATATGAGCCGCTGCTGATCGGG 507785 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 || | | || || ||| ||| ||| || | | | | |||||| |||| Sbjct 507784 AGGTATTCCTTCCTTATCCTGGATCTTCGTCTTCACGTTATCAATCGTATCAGAGCTC-- 507727 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 ||||| |||| ||||| | || || |||| || || ||||||||||||||| Sbjct 507726 -TCCACCTCCAAGGTGATTGTCTTCCCTGTCAAAGTCTTCACAAAGATTTGCATC 507673 Score = 82.4 bits (90), Expect = 7e-11 Identities = 171/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| || |||| || ||| |||| || |||| || ||||| | || ||||| Sbjct 508145 TAACAAAGATTTG--CATGCCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTT 508088 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| || || || || || | || || | || || | |||||||| || || ||||| Sbjct 508087 TTGGATGTTGTAGTCTGCCAAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAG 508028 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||||| |||| || | || || ||||| || ||| || | | ||| | || Sbjct 508027 CCTTTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGAATCTTC-GTCTTAACGTTGTCAA 507969 Query 39219 -CGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 ||| || |||| ||||| |||| |||||| | || ||||||| ||| || |||| Sbjct 507968 TCGTGTCAGAGCTC---TCCACCTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAA 507912 Query 39275 AGATTTGCAT 39284 |||||||||| Sbjct 507911 AGATTTGCAT 507902 >seq1748 Length=695821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||| ||| || || || || || |||||||| ||||| | || || Sbjct 274562 CACCAAGTGCAAGGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTC 274621 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| || || || || | ||||||||| | || | || ||| |||||| Sbjct 274622 GAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTG 274681 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| ||| || | | | | ||||| ||||| || || | ||||| | || Sbjct 274682 GATCTTCGTCTTCACATTGTCGATAGTATCAGAGGACTCGACCTCGAGAGTGATGGTCTT 274741 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || |||||||| ||||| Sbjct 274742 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 274771 >seq1705 Length=561313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || | ||| ||| || || || || || || || || || || | || || Sbjct 93177 CACCAAGTGCAACGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGACCATCTTC 93236 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| || || || |||||||| || |||| || | || ||| |||||| | Sbjct 93237 GAGCTGCTTGCCGGCGAAAATCAGACGCTGTTGATCGGGAGGAATGCCCTCCTTGTCC-T 93295 Query 39195 GATTTTCTGTTTGAGCGTCGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 || ||| ||||| | | | | | ||||| ||||| || || | |||||| | | Sbjct 93296 GAATTTTTGTTTTCACATTGTCGATAGTATCAGAGGACTCGACCTCAAGCGTGATGGTCT 93355 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||||||| || || ||||| ||||| Sbjct 93356 TGCCCGTCAGCGTCTTCACGAAGATCTGCAT 93386 >seq1943 Length=2190071 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 39056 AGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG 39115 |||||||||| | ||| | ||||| ||| | || ||| || || || |||||||| | Sbjct 1470984 AGCCTCCTCTGAGGCGAAGCACCAGATGCAAGGTAGACTCCTTCTGAATGTTATAATCAG 1470925 Query 39116 CAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGG 39175 |||| || || | || || ||||||||||||||||| || | || |||||||||| | Sbjct 1470924 CAAGAGTACGACCATCTTCCAGCTGTTTGCCCGCAAAGATCAACCGTTGCTGGTCGGGAG 1470865 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACT 39232 | | | || || ||| ||| || || | | | | ||||| ||| || Sbjct 1470864 GAATACCTTCCTTATCCTGGATCTTAGTCTTAACATTATCAATAGTATCAGAGCT---CT 1470808 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || || | ||||| ||||||| ||||| || || ||||| || |||||| Sbjct 1470807 CAACCTCAAGAGTGATTGTTTTTCCAGTCAGAGTCTTTACAAAAATCTGCATC 1470755 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 ||| | | || ||| ||||| || || ||||| | || | ||| ||| || || || Sbjct 1469854 AATATTTGCATGCCACCTCTCAAACGCAACACAAGGTGCAACGTCGACTCCTTCTGAATG 1469795 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 ||||| || || | || || |||| || | ||| || || ||||| ||||| | |||| Sbjct 1469794 TTATAGTCTGCCAACGTACGCCCGTCCTCCAACTGCTTCCCGGCAAAGATAAGCCTCTGC 1469735 Query 39166 TGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC- 39224 ||||||| || | | ||| |||||| || ||| || | | | | |||||| Sbjct 1469734 TGGTCGGGAGGGATCCCCTCCTTGTCCTGAATCTTCGTCTTCACGTTATCAATCGTATCC 1469675 Query 39225 --GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGC 39282 ||| ||| || |||| |||||| | || ||||||| || || |||||||||||| Sbjct 1469674 GAGCT---CTCGACTTCCAACGTGATCGTCTTCCCCGTCAAGGTCTTCACAAAGATTTGC 1469618 Query 39283 AT 39284 || Sbjct 1469617 AT 1469616 Score = 82.4 bits (90), Expect = 7e-11 Identities = 167/244 (68%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || || || || | ||| ||||||| || |||||| ||| || || || Sbjct 1470083 AAATATTTGCATACCGCCCCTCAGGCGCAACACCAGGTGAAGCGTGGACTCCTTCTGAAT 1470024 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || |||||||| || || || | || || | ||| || || ||||| || | || || Sbjct 1470023 GTTGTAATCGGCCAGAGTACGCCCATCCTCCAACTGCTTTCCGGCAAAAATCAATCGTTG 1469964 Query 39165 CTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACC-GTAT 39223 |||||| | || | | |||||||| || ||| || | | ||| || |||| Sbjct 1469963 CTGGTCAGGTGGAATACCTTCTTTGTCTTGAATCTTC-GTCTTAACGTTATCAATAGTAT 1469905 Query 39224 C---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | |||| || || |||| ||| || | || |||||||||||||| || || |||| Sbjct 1469904 CTGAGCTC---TCAACTTCCAACGTAATCGTCTTCCCCGTCAGCGTTTTGACGAATATTT 1469848 Query 39281 GCAT 39284 |||| Sbjct 1469847 GCAT 1469844 >seq1721 Length=608652 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||||| | ||| | ||||||||| | ||| ||| || || ||||| || || ||| Sbjct 212970 CCTCCTCGAAGGCGGAGCACCAAATGCAAAGTGGACTCCTTCTGGATATTGTAGTCAGCA 212911 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || || | ||||||||||| || Sbjct 212910 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAAATGAGCCTCTGCTGGTCGGGAGGA 212851 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| ||||||| || | | | | ||||| || || || Sbjct 212850 ATGCCCTCCTTGTCCTGGATTTTCGTCTTCACATTATCGATAGTATCTGATGATTCAACC 212791 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || | || ||||| || || || |||||||| ||||| Sbjct 212790 TCGAGAGTAATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 212744 >seq1639 Length=407714 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| | ||| | ||||| ||| || ||| ||| || || || || || ||||| Sbjct 35326 CCACCTCTGAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCG 35267 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || |||||||| | ||||||||||| | || Sbjct 35266 AGCGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAATATCAATCGCTGCTGGTCAGGAGGA 35207 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| | | || | | ||| | | | || ||| ||| || Sbjct 35206 ATTCCCTCCTTGTCC-TGAATCTTGGTCTTAACGTTGTCAATTGTGTCGGAGCTCTCGAC 35148 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || ||||| || ||||| || || || |||||| Sbjct 35147 CTCCAAGGTGATCGTCTTGCCCGTTAGGGTTTTCACGAAAATCTGCATC 35099 Score = 82.4 bits (90), Expect = 7e-11 Identities = 165/238 (69%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || |||||||| || || || ||| || || || || || ||||| Sbjct 34870 CCTCCCCTAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCG 34811 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || || || || | ||||||||||| | || Sbjct 34810 AGCGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATTAATCGCTGCTGGTCAGGAGGA 34751 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCG-CCACCGTATC---GCTCGACT 39232 | | ||| |||||| ||| | | || |||| ||| | | | ||||| ||| || Sbjct 34750 ATTCCCTCCTTGTCC-TGAATCTTGGTCTTGA-CGTTGTCGATGGTATCCGAGCT---CT 34696 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 | || |||| || || | || |||||||| ||||| || ||||| |||||| |||| Sbjct 34695 CGACCTCCAAGGTAATTGTCTTCCCCGTCAGAGTTTTCACGAAGATCTGCATCCTTAC 34638 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || | || |||||||| || || || ||| || || || || || ||||| Sbjct 35098 CCTCCCCTAAGACGCAACACCAAGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCG 35039 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || ||||| || || |||||||| | ||||||||||| | || Sbjct 35038 AGCGTGCGGCCATCCTCTAGCTGCTTTCCAGCAAATATCAATCGCTGCTGGTCAGGAGGA 34979 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| |||||| ||| | | || | | ||| | | | || ||| ||| || Sbjct 34978 ATTCCCTCCTTGTCC-TGAATCTTGGTCTTAACGTTGTCAATTGTGTCGGAGCTCTCGAC 34920 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| ||||| | || ||||| || ||||| || || || |||||| Sbjct 34919 CTCCAAGGTGATCGTCTTGCCCGTTAGGGTTTTCACGAAAATCTGCATC 34871 >seq1762 Length=742324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || ||||| | ||| | || || ||||| ||||||||||| || Sbjct 519197 CCTCCCCTCAACCGCAACACAAGATGCAAGGTCGATTCCTTTTGGATATTATAATCAGCC 519138 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | || || |||| || || || || || ||||| ||||| | ||||||||||| || Sbjct 519137 AAAGTACGACCGTCTTCCAGTTGCTTACCTGCAAAAATAAGCCTCTGCTGGTCGGGAGGG 519078 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| || | | ||| || | | | | |||||| ||||| Sbjct 519077 ATGCCCTCCTTGTCC-TGTATCTTTGTCTTTACATTATCAATAGTATCGGAACTTTCCAC 519019 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| || || | || ||||||| || || ||||| |||||||| Sbjct 519018 CTCCAATGTTATCGTCTTCCCCGTCAATGTCTTGACAAAAATTTGCAT 518971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429535182176870