Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq1917 102 7e-17 seq1943 84.2 2e-11 >seq1917 Length=1730829 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||||||||| || || | ||||| |||||||||||||| || ||||| || | Sbjct 508130 TGCCACCTCGCAATCGTAGGACTAAATGCAAGGTTGATTCTTTTTGGATGTTGTAGTCTG 508071 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| || ||| |||||||||||||| || | ||||||||||| || || | Sbjct 508070 CCAAGGTGCGACCATCCTCCAATTGTTTGCCGGCGAAAATAAGCCTTTGCTGATCGGGAG 508011 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | |||||| ||||| ||| || || || | | | | ||| || | | | Sbjct 508010 GAATGCCTTCCTTGTCTTGAATCTTCGTCTTAACGTTGTCAATCGTGTCAGAGCTCTCCA 507951 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||| ||||| || |||||||| || || | ||| |||||||| Sbjct 507950 CCTCCAAGGTGATAGTCTTCCCCGTCAACGTCTTCACAAAGATTTGCAT 507902 >seq1943 Length=2190071 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| ||| | | |||| ||||| || || || || ||||| |||||||| ||| Sbjct 1470298 CCTCCTCTCAAGCGCAGGACCAAGTGCAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1470239 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| |||||||| ||| ||||| ||| | ||||| || || || || ||| Sbjct 1470238 AAAGTACGACCATCTTCCAGTTGCTTGCCGGCAAAGATAAGTCTCTGCTGATCCGGGGGA 1470179 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--G 101189 | ||||||||||| ||| || ||||| | | | | || || | || || Sbjct 1470178 ATTCCTTCTTTGTCCTGAATCTTAGTCTTCACGTTGTCGATGGTGTC--AGAACTTTCCA 1470121 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 ||| | || ||||| || |||||||| || |||| ||| |||||||| Sbjct 1470120 CTTCTAATGTGATAGTCTTCCCCGTCAACGTCTTAACAAATATTTGCAT 1470072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409650864445410