Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1886 138 2e-27 seq1794 136 5e-27 >seq1886 Length=1372085 Score = 138 bits (152), Expect = 2e-27 Identities = 238/341 (70%), Gaps = 6/341 (2%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 ||||||||||| || || || || ||||||| || | |||||| ||||| || || Sbjct 694646 CATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGC 694587 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGAT-CCAGAAAAGAA 48259 || ||||| || || | || ||||||||||| | || ||| ||| | || |||||||| Sbjct 694586 CCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGA-TGGCGCAAAAACTCCCTGAAAAGAA 694528 Query 48260 TATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTAT 48319 || || || ||| || || || | ||||||| | | || | | ||| || Sbjct 694527 AATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCACTGTCGAT 694468 Query 48320 CCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 ||| | | ||||| ||||||||| | || ||||| || || || || ||||| || Sbjct 694467 CCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTGAA 694408 Query 48380 GAGAAAGtttttttCA--TTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || | | || ||| ||| |||||||| ||| | || | || | ||| |||||| Sbjct 694407 AAGTCTGCTCTTCTCAGCTTG--ATCTTTAATGTACGCCTCCAACAACAAACTGTACATT 694350 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAA 48478 || |||||||| || ||||| || ||||| |||||||| || Sbjct 694349 TCTGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAA 694309 >seq1794 Length=856596 Score = 136 bits (150), Expect = 5e-27 Identities = 287/428 (67%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 ||||| || || ||||| ||| ||| ||| || ||||| ||||| | | ||| Sbjct 303978 TCAAACTCTTCACCCCAGCAATCTGCCAGTCCTGGAGCCTCATTGGGGCAGAAAAGAGAC 303919 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || | |||| || | || ||| |||| || || || || ||||| ||| || ||| Sbjct 303918 CATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCACAGACCATAGAAT 303859 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 |||||||| | |||| ||| || || || |||||| ||||||| || | || | Sbjct 303858 AGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAGATCCAGCCAATCGAAT 303799 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 ||||| | |||||| || || ||||| || || | | | || | || || ||| Sbjct 303798 ATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCCTCTTGCCGCCACCC 303739 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | || | || |||| ||| | || |||||||| || || || || ||||| Sbjct 303738 TGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGGATGATCCCATTAGAA 303679 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 || || ||||| ||| ||| || || ||| | || || |||||| || || | || Sbjct 303678 GTCCCGTTTGTGCCACGAATGTAGCTGCCAGTAGCACGGATATTATGAACTGACAAACCA 303619 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 ||||| || || ||| || | ||| || |||| || |||||||||||||| Sbjct 303618 ATTCCACCAGCTGACTTGCTAATAACAGCACACTCCTTCAGAGTGTCGTAGATACCCTCA 303559 Query 78345 ATACTGTC 78352 || ||||| Sbjct 303558 ATGCTGTC 303551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694651520113600