Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1886 172 8e-38 seq1794 123 4e-23 seq1948 111 2e-19 >seq1886 Length=1372085 Score = 172 bits (190), Expect = 8e-38 Identities = 243/339 (72%), Gaps = 2/339 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 ||||||||||| || || ||||| ||||||| || | |||||| ||||| || ||| Sbjct 694646 CATGCAAAATCGCAGTGCAGGCCCTCATCTCGTGAGATGAGTTCGTTGGAAAACGTAAGC 694587 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA-GAAAAGAA 46748 || ||||| || || | ||| ||||||||||| || || || ||| ||| |||||||| Sbjct 694586 CCTGGCATAAGACCTCTCTTCTTGAGCCAAAAGATGGC-GCAAAAACTCCCTGAAAAGAA 694528 Query 46749 TATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAAT 46808 || || || || ||||| || | | ||||||| | | || || || | | || Sbjct 694527 AATCCCCTCGACGCAGGCGAAAGCCAGGATTCTCTCTGCAAAGCTCCCAGCACTGTCGAT 694468 Query 46809 CCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| || ||||||| |||||||| | || ||||| || || || || ||||| || Sbjct 694467 CCATTTTAGAGCCCAGTCAGCCTTCCTAGCAACGCAAGGTATGGTCTCAATGGCATTGAA 694408 Query 46869 GAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTC 46928 || | | || ||| | |||||||| || | || | || | ||| |||||||| Sbjct 694407 AAGTCTGCTCTTCTCAGCTTGATCTTTAATGTACGCCTCCAACAACAAACTGTACATTTC 694348 Query 46929 TGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAA 46967 ||| |||||||| |||||||| ||||| |||||||| || Sbjct 694347 TGAGTGAATGTTCTCAATAGCTATCTGGAATCCGTAGAA 694309 >seq1794 Length=856596 Score = 123 bits (136), Expect = 4e-23 Identities = 284/428 (66%), Gaps = 0/428 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 ||||| || || ||||| ||| ||| || ||| ||||| || || | | ||| Sbjct 303978 TCAAACTCTTCACCCCAGCAATCTGCCAGTCCTGGAGCCTCATTGGGGCAGAAAAGAGAC 303919 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 || | |||| || | || ||| |||| || || || || ||||| ||| || ||| Sbjct 303918 CATACGCCATTCTCTTGCACACGTCTCATGAAAAGGTCTGGAATCCACAGACCATAGAAT 303859 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 |||||||| | ||| ||| || || || |||||| ||||||| || | || | Sbjct 303858 AGATCTCGAGCCCTATTTTCCTCCTTCCCATGATTCTTCCTAAGATCCAGCCAATCGAAT 303799 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCC 76759 ||||| | |||||| || || ||||| || || | | | ||| | || || ||| Sbjct 303798 ATATCGGCATGCCACGGCTCCAGATAGATAGCGAAAGCGCCCTTCCTCTTGCCGCCACCC 303739 Query 76760 TGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGAT 76819 || || | || | || |||| ||| | || |||||||| || || || || ||||| Sbjct 303738 TGGTCGACGTACCGAGCTGTGTCATTGAATACCCTCAACATCGGGATGATCCCATTAGAA 303679 Query 76820 GTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCT 76879 || || ||||| ||| ||| || || ||| ||||| |||||| || || | || Sbjct 303678 GTCCCGTTTGTGCCACGAATGTAGCTGCCAGTAGCACGGATATTATGAACTGACAAACCA 303619 Query 76880 ATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCT 76939 ||||| || || || || | |||||| |||| ||||| ||||| ||||| Sbjct 303618 ATTCCACCAGCTGACTTGCTAATAACAGCACACTCCTTCAGAGTGTCGTAGATACCCTCA 303559 Query 76940 ATACTATC 76947 || || || Sbjct 303558 ATGCTGTC 303551 >seq1948 Length=2296919 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 46738 CCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCA 46797 || |||||||| || ||||| ||| ||||| || | || |||||| || | || || Sbjct 1731755 CCCGAAAAGAAAATCCCTTCGACACAGGCGAAGGCCAGAATTCTCTCCGCGAAGCTTCCA 1731814 Query 46798 TCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCT 46857 || | || ||||| | ||||||| || || || || | ||||| || || ||||| Sbjct 1731815 GCACTGTGGATCCATTTCAGAGCCCATTCTGCTTTCTTGGTGACACATGGTATGGTTTCA 1731874 Query 46858 ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGA 46917 || || || ||||| ||||| || || |||||| | |||| || | | | | Sbjct 1731875 ATGGCGTTGAAGAGCCGATTTTTCTCGGCATGATCTTTGATGTATGCCTCCAACAGTAAA 1731934 Query 46918 CTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGC 46976 || ||||| || || || |||||||| || || |||||||||||||| || |||||| Sbjct 1731935 CTGTACATCTCAGAGTGTATGTTTTCGATGGCAATCTGAAATCCGTAGAATGCTCTTGC 1731993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712916665756800