Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1990 724 0.0 >seq1990 Length=122890 Score = 724 bits (802), Expect = 0.0 Identities = 762/997 (76%), Gaps = 8/997 (1%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||||| ||| ||||||||||| | |||||||| || | || ||||| || | Sbjct 54233 CTTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTT 54174 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||||| ||||| || | ||||| |||| || || |||| ||| | || |||| Sbjct 54173 AATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTC 54115 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 ||||||| || || || || ||||| || || ||| |||| || || | || ||||||| Sbjct 54114 CTCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACA 54055 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 |||||||||||| ||| | | ||| |||| || || || | |||||||| || | Sbjct 54054 ACATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAA 53995 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCA---ACTCG 183490 | |||||||| || || | ||||| ||||| || ||||||||||||||| | | ||| Sbjct 53994 TTTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCG 53935 Query 183491 TAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTT 183550 | ||||| ||||| | |||| || |||||||||||||||||||||||| | | Sbjct 53934 T--TCTTC-ACTTCTTACTTGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTTAGCT 53878 Query 183551 ACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAA 183610 ||||| | |||||||||||||||||| |||||| ||| || |||||||| ||||| | Sbjct 53877 ACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTA 53818 Query 183611 CCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGG 183670 | ||||| ||| || |||| || | |||||||| || ||| |||||||| | | Sbjct 53817 CTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAG 53758 Query 183671 GTATCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGC 183730 | ||| ||| || || |||| ||| |||| |||||||| || ||||||||||| |||| Sbjct 53757 GAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGC 53698 Query 183731 ACCCCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGC 183790 |||| ||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||| Sbjct 53697 ACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGC 53638 Query 183791 ACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACT 183850 | ||||| | || ||||| | | |||||||| |||||| |||||| ||| Sbjct 53637 ATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACG 53578 Query 183851 ATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACT 183910 ||||||||||| |||||||| ||||| || |||||||| || |||||||| || |||| Sbjct 53577 CAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACT 53518 Query 183911 TTGGTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCC 183970 ||||| | | || ||||| || ||| |||||||| ||||||||| | ||||||||| Sbjct 53517 TTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCT 53458 Query 183971 TTGCTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCAT 184030 | ||||||||||| || || || |||||||| ||||| | ||| | ||||||||||| | Sbjct 53457 TAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTT 53398 Query 184031 TTAACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGA 184090 | ||| | || ||||| ||||||||||| || | |||| ||||||||||||| | | Sbjct 53397 TCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTA 53338 Query 184091 ACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTA 184150 |||| ||||| ||| | ||||||||||| ||||| |||||||| ||||| || |||| Sbjct 53337 ACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 53278 Query 184151 ATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 184187 | ||||||||||||||||| ||| | ||| ||| ||| Sbjct 53277 ACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 524 bits (580), Expect = 9e-144 Identities = 718/1003 (72%), Gaps = 0/1003 (0%) Strand=Plus/Minus Query 185971 TGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTT 186030 ||||||||||||| | | | ||||| ||||| ||||| || |||||||| || | |||| Sbjct 44454 TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTT 44395 Query 186031 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCT 186090 |||| |||||| | | | ||||| ||| |||| || ||||| ||||| || | Sbjct 44394 TTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCAT 44335 Query 186091 GGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAG 186150 ||||||| || || ||||| ||||| | || ||| ||||||||| || || || | Sbjct 44334 GGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTG 44275 Query 186151 TGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTC 186210 | || ||||||||| | | | | ||||| | | ||| | |||||||| || | | Sbjct 44274 TTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCAC 44215 Query 186211 AAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACG 186270 |||||||| ||| || |||| ||| | || || || |||| ||| || || || || | Sbjct 44214 AAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATG 44155 Query 186271 GAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTA 186330 |||| |||||| | ||||| || ||| |||| || ||||| | | | |||| Sbjct 44154 GAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGATCCGTACAAT 44095 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | ||||| || || || |||||||||||||| || || ||||| |||||| |||||| Sbjct 44094 TACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATTTT 44035 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAA 186450 | || ||||| ||||| || || ||||| || || || ||||| || ||||||| Sbjct 44034 TAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGCAA 43975 Query 186451 TCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACA 186510 | || ||||| | || ||| ||||||| ||||| |||||||| || || ||||| || | Sbjct 43974 TTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCATA 43915 Query 186511 TGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTG 186570 ||||||| || || || || | || | |||||| | | || || ||||||| |||| Sbjct 43914 TGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAACTG 43855 Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGA 186630 ||||||||||| | | ||||||||| || ||||| |||||| || || | | | Sbjct 43854 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCCAA 43795 Query 186631 CGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCG 186690 | ||| |||||||| ||||| ||||| || || ||| | |||||||| || ||||||| Sbjct 43794 CTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTTCG 43735 Query 186691 GAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGG 186750 | |||| ||| || || |||||| | |||||||| ||||| ||||| || || | | Sbjct 43734 GTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAACTG 43675 Query 186751 GTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACT 186810 || | |||| | | ||||| | ||||| | ||| | || | || |||||||| | Sbjct 43674 GTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGATT 43615 Query 186811 TTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGA 186870 |||| |||||| | | ||||| || || ||||| || || || || || || || | Sbjct 43614 TTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAAAA 43555 Query 186871 ATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAA 186930 |||| || | ||||||||| | ||||| ||||||||| | ||||| || ||||||| Sbjct 43554 ATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGAAA 43495 Query 186931 ACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 | ||||||| || || || || | ||| | || |||||||| Sbjct 43494 ATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622054925998800