Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1990 719 0.0 seq1942 91.5 2e-13 >seq1990 Length=122890 Score = 719 bits (796), Expect = 0.0 Identities = 760/995 (76%), Gaps = 6/995 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| ||||||| || || || || || | || |||| |||||||| || | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 163988 ATGATTCCCTGCCTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTCC 164046 |||||||| || | | || ||| | ||| || || || || ||||| | ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACTTC-TGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 |||||| || || ||||| ||||| || || || ||||||| || | || |||||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||||||||||| |||| | |||||| ||||| ||||||||| ||||||||||||| || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 |||||||| || | || |||||||| |||||||||||||||| | | | | || Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 164227 GTTCCACTTCCTGATTGGCAT--CTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 164284 | |||||| | |||| | || |||| ||||||||||||||||||||||| ||| Sbjct 53933 TCTTCACTTCTTACTTGGTGTAGCT-TGCT-ACATGGGTCGTGAGTGGGAACTTAGCTAC 53876 Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 ||| | ||||||||||||||||| || ||||| || |||||||| || || || | | Sbjct 53875 CGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCTACT 53816 Query 164345 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 164404 || || ||| || |||| || | |||||||| |||||||| | |||||| | || Sbjct 53815 GCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTAGGA 53756 Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 |||||||| || ||||||| |||| | || ||||| ||||| ||||||||||| |||||| Sbjct 53755 ATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATGCAC 53696 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || ||||| ||||| || ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 53695 CCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATGCAT 53636 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| | || ||||| | | ||||| || || || |||||||| ||| Sbjct 53635 GGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGAGTCTGCTAACGCA 53576 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 ||||||||||||||||| || |||||||| ||||||||||| || ||||||||||||||| Sbjct 53575 GGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTTACTTT 53516 Query 164645 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 164704 ||| | | ||||||||||||||| ||| |||||||| ||||| | ||||||||| | Sbjct 53515 GGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCTTCTTA 53456 Query 164705 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTC 164764 || || |||||||| || ||||||||||| ||||| | || | ||||| ||||| ||| Sbjct 53455 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGGCTTTC 53396 Query 164765 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164824 ||| | |||||||||||||||||||| || | | || |||| |||||||| | ||| Sbjct 53395 AACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTATTAAC 53336 Query 164825 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAAT 164884 || ||||| ||| | ||||||||||| || || |||||||| ||||| || ||||| Sbjct 53335 ACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAC 53276 Query 164885 GCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 164919 ||||||||||||||||| ||| | ||| ||| ||| Sbjct 53275 GCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGA 53241 Score = 574 bits (636), Expect = 5e-159 Identities = 733/1009 (73%), Gaps = 8/1009 (1%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 || |||||||| | |||||||||||| || ||||| || |||||||| || | |||||| Sbjct 44452 GATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGGTCTATTACTTTTT 44393 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || |||||| || || | || || ||| |||| || || ||||| || || ||| Sbjct 44392 CCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTTTGTAACTTCATGG 44333 Query 165285 TATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTTACTGCGGCAGTT 165344 |||||||| ||| | || || || ||| | || ||| || ||||| ||||| || ||| Sbjct 44332 TATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCTAACTGCTGCTGTT 44273 Query 165345 TCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAA 165404 |||||||| || | | | | ||||| | | || |||||||||| || | ||| Sbjct 44272 TCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGGTCCAGAAGCACAA 44213 Query 165405 GGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGA 165464 || || |||| || ||||| ||| | || || || |||||||| || || || || ||| Sbjct 44212 GGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGTTGCTCTTCATGGA 44153 Query 165465 GCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGTA-- 165522 || ||||| | ||||| || ||| | ||||| ||||| || || || || ||| Sbjct 44152 GCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGCTAGA----TCCGTACA 44097 Query 165523 --TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTT 165580 | |||||||| || || |||||||| ||||| || |||||||| || ||| ||| || Sbjct 44096 ATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTTTTTGTTTCTGTATT 44037 Query 165581 TCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGC 165640 | | || || || || || ||||| ||||| || ||||| || || || ||||| Sbjct 44036 TTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGTTTTGGTGTTGCAGC 43977 Query 165641 AATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTGAATCCCTTTCA 165700 ||| ||||||||| | | ||| ||||||| |||||||||||||| | || || ||||| Sbjct 43976 AATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTTCA 43917 Query 165701 CATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCTGCCATTCATGGTGTTAC 165760 |||||||| || || || |||| || | || | | | ||| |||||||||| || Sbjct 43916 TATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCTATTCATGGTGCAAC 43857 Query 165761 AGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGATAG 165820 ||||| |||||||| | |||||||||||| ||||| || ||| || ||| | Sbjct 43856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCGTTTAACCC 43797 Query 165821 TACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATTTT 165880 ||||| || ||||||||||| ||||| || |||||||||||||||||||| || || Sbjct 43796 AACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTCTGGTCTCAAATCTT 43737 Query 165881 TGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTCAT 165940 ||| |||| || || || |||||| | || ||||||||||| ||||| || || | Sbjct 43736 CGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTATTTGTACCAGTAAC 43677 Query 165941 GGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTATGA 166000 || | |||| ||| ||||||| | ||||| | || | ||| | || |||||||| Sbjct 43676 TGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCTTTAAATTTACGAGCTTATGA 43617 Query 166001 TTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACGAA 166060 |||||| |||||||| ||| | || ||||| || || || |||||||| || || || || Sbjct 43616 TTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGAAACTTTTTACACTAA 43557 Query 166061 AAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCATGA 166120 ||| || || || |||||||| | ||||| ||| |||| || ||| || |||||||| Sbjct 43556 AAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCAAGATCAGCCTCATGA 43497 Query 166121 GAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || |||| ||||| || || || | ||| | || ||||| |||||| Sbjct 43496 AAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 43448 >seq1942 Length=2165708 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 161554 GTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGG 161613 |||||| | || || || ||||| ||||| |||||| | |||||||| || || || Sbjct 1167334 GTACATCTTGGATGCCGCGGAGGAGGCGGGAGTGGACCTTCCGTACTCGTGCCGAGCCGG 1167275 Query 161614 CGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 161673 || || ||| |||||||||| || || ||||| || ||||| ||| ||| Sbjct 1167274 TGCGTGCTCGACGTGCGCGGGGCAAATCAAGGAGGGCACGGTGGACCAGTCGGACGGGTC 1167215 Query 161674 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733 ||||||||||| || ||||| || || ||| | ||||| || || | || || || Sbjct 1167214 ATTCCTGGACGACGAGCAAATGGAGAAGGGGTTCGTGCTGACGTGCGTGGCGTACCCGAC 1167155 Query 161734 GAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTG 161773 | || ||||| |||||| | || || ||||| ||| Sbjct 1167154 GTCGGACCTGGTGATCGAGACTCACAAGGAGGAGGACCTG 1167115 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 161554 GTACATTCTTGACGCAGCTGAGGAAGCGGGTGTGGACATCAACTACTCGTGTCGTGCAGG 161613 |||||| | || || || ||||| ||||| |||||| | |||||||| || || || Sbjct 1174919 GTACATCTTGGATGCCGCGGAGGAGGCGGGAGTGGACCTTCCGTACTCGTGCCGAGCCGG 1174860 Query 161614 CGCTTGTTCGTCGTGCGCGGGAAAACTCGTCTCTGGCACCGTAGACCAAAGCGACCAGTC 161673 || || ||| |||||||||| || || ||||| || ||||| ||| ||| Sbjct 1174859 TGCGTGCTCGACGTGCGCGGGGCAAATCAAGGAGGGCACGGTGGACCAGTCGGACGGGTC 1174800 Query 161674 CTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGTGTTTCTTATCCCAC 161733 ||||||||||| || ||||| || || ||| | ||||| || || | || || || Sbjct 1174799 ATTCCTGGACGACGAGCAAATGGAGAAGGGGTTCGTGCTGACGTGCGTGGCGTACCCGAC 1174740 Query 161734 GAGCGATTGTGTGATTGAGACTGAGAAAGAAGAGGAACTG 161773 | || ||||| |||||| | || || ||||| ||| Sbjct 1174739 GTCGGACCTGGTGATCGAGACTCACAAGGAGGAGGACCTG 1174700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557640528346800