Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Physcomitrella_20patens_20[refseq_20GCF_5F000002425.3_202007-12-14] 1,990 sequences; 477,947,608 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1990 711 0.0 >seq1990 Length=122890 Score = 711 bits (788), Expect = 0.0 Identities = 765/1001 (76%), Gaps = 16/1001 (2%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| ||||||| ||| ||| | || || || || |||| ||||||||||| | Sbjct 54232 TTCTGCGACTGGGTTACCAGCACTGAAAACCGCCTTTACATCGGATGGTTCGGTGTTTTA 54173 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||| ||||| || | |||| || ||||| || || | |||||| | || ||||| Sbjct 54172 ATGATTCCTACTCTATTAACTGCAACT-TCTGTATTTATTATTGCTTTCATTGCAGCTCC 54114 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 |||||| || || || || |||||||| || || ||||||| || | || || ||||| Sbjct 54113 TCCTGTAGATATTGATGGTATCCGTGAGCCTGTTTCTGGTTCTCTTCTTTACGGAAACAA 54054 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| |||| |||| | | ||| ||||| ||||| ||| | |||||||| || || Sbjct 54053 CATCATCTCTGCTGCTATCATCCCTACTTCTGCAGCTATCGGTTTGCACTTCTACCCAAT 53994 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA---ACTCGT 177893 |||||||| ||||| | ||||| ||||| ||||| |||||||||| | | | |||| Sbjct 53993 TTGGGAAGCTGCTTCCGTTGATGAATGGCTTTACAACGGTGGTCCTTACGAGTTAATCGT 53934 Query 177894 TATCTTCCACTTCCTGATCGGTAT--CTATGCATACATGGGTCGTGAGTGGGAACTTTCT 177951 | |||| ||||| | | ||| | || ||| |||||||||||||||||||||||| Sbjct 53933 T--CTTC-ACTTCTTACTTGGTGTAGCT-TGC-TACATGGGTCGTGAGTGGGAACTTAGC 53879 Query 177952 TACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCA 178011 ||||| ||||||||||||| |||||| ||| ||||| || ||||| || || || || Sbjct 53878 TACCGTTTAGGTATGCGTCCTTGGATCGCTGTTGCATATTCAGCTCCTGTTGCGGCTGCT 53819 Query 178012 TCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTG 178071 ||||||| ||| | | || || | |||||||| |||||||||| |||||| | Sbjct 53818 ACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGCTTCTCTGACGGTATGCCTTTA 53759 Query 178072 GGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATG 178131 || ||| ||| || ||||||| |||| |||| |||||||| || ||||||||||| ||| Sbjct 53758 GGAATCTCTGGTACTTTCAACTTCATGATTGTGTTCCAAGCTGAACACAACATCCTTATG 53699 Query 178132 CACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATG 178191 ||||| ||||||||| | || || |||||||| || ||||| ||||| |||||||| ||| Sbjct 53698 CACCCATTCCACATGCTTGGTGTAGCTGGTGTATTCGGTGGCTCTCTATTCAGTGCTATG 53639 Query 178192 CACGGTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--A 178249 || ||||| | || ||||| | | |||||||| || ||||| || ||| | | Sbjct 53638 CATGGTTCCTTAGTAACTTCAAGTTTAATCCGTGAAACTACTGAGAATGA--GTCTGCTA 53581 Query 178250 ACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTT 178309 || ||||||||||| |||||||| ||||| || ||||||||||| |||||||| |||| Sbjct 53580 ACGCAGGTTACAAGTTTGGTCAAGAGGAAGAAACTTACAACATCGTAGCTGCTCACGGTT 53521 Query 178310 ACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCT 178369 |||| ||| | | || ||||||||||| ||| |||||||| ||||| | ||||||| Sbjct 53520 ACTTTGGTAGATTAATTTTCCAATACGCTAGCTTTAACAACTCTCGTTCTTTACACTTCT 53461 Query 178370 TCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGG 178429 || | || || |||||||| || ||||||||||||||||| | ||| | ||||| |||| Sbjct 53460 TCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCATTAGGTATCAGCACTATGG 53401 Query 178430 CATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCC 178489 | |||||| | |||||||||||||||||||| || | | || ||||| || || Sbjct 53400 CTTTCAACTTAAACGGTTTCAACTTCAACCAATCTGTTGTTGACAGTCAAGGTCGTGTTA 53341 Query 178490 TGAACACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGC 178549 | ||||| ||||| ||| | ||||||||||| |||||||||||||| ||||| || | Sbjct 53340 TTAACACTTGGGCTGACATCATCAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 53281 Query 178550 GTAATGCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 |||| ||||||||||||||||| ||| | ||| ||| |||| Sbjct 53280 GTAACGCTCACAACTTCCCTCTAGACTTAGCTTCTGTTGAA 53240 Score = 509 bits (564), Expect = 2e-139 Identities = 729/1020 (71%), Gaps = 14/1020 (1%) Strand=Plus/Minus Query 178839 TTTGAT-GTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| ||| | ||||||||||| | | || || || || ||||| |||||||| || Sbjct 44464 TTTGATAGTA-TGGATGACTGGCTAAGAAGAGACCGTTTTGTATTTGTAGGTTGGTCTGG 44406 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 ||| | || || || ||||| | | | || || ||| | || || ||||| || Sbjct 44405 TCTATTACTTTTTCCGTGCGCTTATTTTTCTTTAGGTGGATGGTTTACAGGTACAACTTT 44346 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || ||||||||||| || | ||| || ||| | || || |||||||| || Sbjct 44345 TGTAACTTCATGGTATACTCATGGATTGGCTAGCTCTTATTTAGAAGGTTGTAATTTTCT 44286 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 ||||||||||| || ||||||||| | | | | |||||| || | || ||||||| Sbjct 44285 AACTGCTGCTGTTTCTACTCCTGCTAATAGTTTAGCACATTCGTTATTACTATTATGGGG 44226 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 ||||||||| || ||||||||| || ||| ||| | || || |||||| |||| || Sbjct 44225 TCCAGAAGCACAAGGAGATTTCACTCGTTGGTGTCAATTAGGAGGTCTATGGACTTTCGT 44166 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG 179197 || || || || || || ||| | ||||| || ||| | || || ||||| | || Sbjct 44165 TGCTCTTCATGGAGCTTTTGCTTTAATAGGCTTTATGTTGCGCCAATTTGAGCTTGC--- 44109 Query 179198 TCTAG-TCGGTA----TTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTC 179252 ||| || ||| | |||||||| || ||||| || |||||||| ||||||||||| Sbjct 44108 --TAGATCCGTACAATTACGTCCTTATAACGCAATTGCTTTTTCTGGCCCAATTGCTGTT 44051 Query 179253 TTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCG 179312 ||||| ||||| ||| | || || || || || || || ||||| ||||| || Sbjct 44050 TTTGTTTCTGTATTTTTAATTTACCCACTTGGTCAATCAGGTTGGTTTTTTGCACCTAGT 43991 Query 179313 TTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACG 179372 ||||| |||||||| |||||||| ||| | | ||| | || || ||||| |||||||| Sbjct 43990 TTTGGTGTTGCAGCAATTTTCCGATTCATTTTATTCTTCCAAGGTTTCCATAACTGGACT 43931 Query 179373 CTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCC 179432 | ||||| || || |||||||| || || || || |||| | || | | ||||| Sbjct 43930 TTAAACCCATTTCATATGATGGGAGTTGCTGGAGTCTTGGGAGCTGCTCTTTTATGTGCT 43871 Query 179433 ATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTC 179492 ||||||||||| || ||||| || || | |||||||| |||| ||||||||||| Sbjct 43870 ATTCATGGTGCAACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 43811 Query 179493 AAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTC 179552 || || | || || ||| || || || ||||| |||||||| || ||||||||| Sbjct 43810 CGTGCGTTTAACCCAACTCAATCTGAAGAAACTTATTCTATGGTTACAGCTAACCGTTTC 43751 Query 179553 TGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTG 179612 |||||||| ||||| ||| | || || || || |||||| | |||||||||||| | Sbjct 43750 TGGTCTCAAATCTTCGGTGTTGCATTTTCTAACAAACGTTGGTTGCATTTCTTTATGCTA 43691 Query 179613 TTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAAC 179672 ||||| || || | ||| | |||| | ||||| | ||||| | || |||| Sbjct 43690 TTTGTACCAGTAACTGGTTTATGGATGAGTGCTATTGGAGTAGTTGGTTTAGCT-TTAAA 43632 Query 179673 CTTA-GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGA 179731 ||| |||||||||| |||||||| || || || | || || || || ||||| || || Sbjct 43631 TTTACGAGCTTATGATTTTGTTTCTCAGGAAATTCGTGCAGCTGAAGACCCTGAATTTGA 43572 Query 179732 GACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGT 179791 || || || || || || || || | ||||||||| | ||||||||||||||| | Sbjct 43571 AACTTTTTACACTAAAAATATTCTTCTAAATGAAGGTATTCGTGCTTGGATGGCAGCTCA 43512 Query 179792 CGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 ||||| || |||||||| ||||||| || || || || | ||| | || |||||||| Sbjct 43511 AGATCAGCCTCATGAAAATCTTGTATTCCCAGAGGAGGTTCTACCACGTGGAAACGCTCT 43452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 18366 TTAGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTAC 18425 || |||| | || |||||||||||||| | ||||||||||||||||||||| ||||||| Sbjct 45563 TTTGGGTCGATGCTCGAGTGGTTAATGGGGACGGACTGTAAATCCGCTGGCTTTGCCTAC 45622 Query 18426 GGGGGTTCAAATCCCTCCCTGCCCA 18450 | ||||||||||| | | ||||| Sbjct 45623 GCTGGTTCAAATCCAGCTCGGCCCA 45647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596292366858400