Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq87603 113 4e-20 seq50088 113 4e-20 seq102373 105 6e-18 seq77395 105 6e-18 seq85017 104 2e-17 seq59239 104 2e-17 seq50989 104 2e-17 seq44759 104 2e-17 seq103297 98.7 8e-16 >seq87603 Length=1014 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | |||||||||||| |||||||| ||||||||| Sbjct 496 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 555 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| ||||| || || ||| | || | | ||||||||| || Sbjct 556 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 615 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | | |||||| | ||| Sbjct 616 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACC 675 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | ||| ||||| || || ||||| Sbjct 676 TCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||| | |||||||||||| |||||||| ||||||||| Sbjct 364 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 423 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| ||||| || || ||| | || | | ||||||||| || Sbjct 424 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 483 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || || | | | | |||||| | ||| Sbjct 484 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACC 543 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| || |||||||| || | ||| ||||| || || ||||| Sbjct 544 TCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq102373 Length=7923 Score = 105 bits (116), Expect = 6e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 |||||||| ||| | || |||||||| || ||||| ||||| || |||||| | | || Sbjct 7713 GAGCACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGTCCATC 7772 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||||| |||||||| | || | ||||||||| ||| || | ||| |||||||| Sbjct 7773 CTCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGAATGCCCTCCTTGTC 7832 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | | ||||| | ||| || | ||||||||| Sbjct 7833 TTGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAACCTCTAGGGTAATGGT 7892 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGC 21173 ||| || || | || || || || |||||| Sbjct 7893 CTTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 Score = 102 bits (112), Expect = 7e-17 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | |||||||||||| |||||||| |||||||| | ||| | | ||| Sbjct 7486 AGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCATCC 7545 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || ||| | || | | |||||| ||| || | ||| |||||||| Sbjct 7546 TCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCC 7605 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CG-TTTCCACGGTAATGG 21141 |||||| || || | | ||| |||| ||| ||| || || | ||| |||| Sbjct 7606 TGGATCTTGGCCTTGACGTTGTCGATGGTAT--CCGAACTCTCGACCTCTAGGGTGATGG 7663 Query 21142 TCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||| ||||| || || || ||||| Sbjct 7664 TCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 7697 >seq77395 Length=9811 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||| | |||| ||| || |||||||| ||||| ||||| ||| Sbjct 1252 CCACCACGGAGGCGGAGCACGAGGTGCAGAGTCGATTCCTTTTGGATGTTGTAGTCAGCC 1311 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| | | ||||||||||| ||||||||| | || || |||||||| || || Sbjct 1312 AGGGTTCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGG 1371 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || || ||||| ||||| ||||| | | ||| ||||| || ||| Sbjct 1372 ATCCCCTCTTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTATCCGAGGACTCAACC 1431 Query 21129 TCCACGGTAATGGTCTTGCCGGT 21151 || | ||| |||||||| ||||| Sbjct 1432 TCGAGGGTGATGGTCTTCCCGGT 1454 >seq85017 Length=850 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || ||||| | ||| |||| ||| | ||| |||||||| || ||||| ||||| Sbjct 212 TTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 271 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || ||||| || | ||||||||||| || || || | || || | ||||||||| Sbjct 272 GCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGA 331 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| |||||| || || | | | | |||||| ||| Sbjct 332 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCA 391 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | || || || || || ||||| Sbjct 392 ACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 >seq59239 Length=983 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || ||||| | ||| |||| ||| | ||| |||||||| || ||||| ||||| Sbjct 345 TTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 404 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || ||||| || | ||||||||||| || || || | || || | ||||||||| Sbjct 405 GCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGA 464 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| |||||| || || | | | | |||||| ||| Sbjct 465 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCA 524 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | || || || || || ||||| Sbjct 525 ACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 >seq50989 Length=854 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 ||||| || ||||| | ||| |||| ||| | ||| |||||||| || ||||| ||||| Sbjct 16 TTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 75 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065 || ||||| || | ||||||||||| || || || | || || | ||||||||| Sbjct 76 GCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGA 135 Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125 || | ||||||||||| |||||| || || | | | | |||||| ||| Sbjct 136 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCA 195 Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| || || | || || || || || ||||| Sbjct 196 ACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 >seq44759 Length=4973 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||||| || || ||||| |||||||| ||||| || |||||| || | ||| Sbjct 4883 AGGACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCC 4824 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| || || || | || || | |||||| || || | ||||||||||| Sbjct 4823 TCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCC 4764 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | | || || ||| ||||| || |||||| Sbjct 4763 TGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTC 4704 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || |||| |||||||| || |||||||| Sbjct 4703 TTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | |||||| || ||||||||||| ||||| ||||| ||||| || | || Sbjct 4427 AGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATCT 4368 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||| ||| || || || | || || | |||||||||| || | ||| |||||||| Sbjct 4367 TCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCC 4308 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | ||| || || | |||| || | ||| ||||| Sbjct 4307 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTT 4248 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 |||||||| | ||| || || || || ||||| |||| Sbjct 4247 TTGCCGGTGAGCGTCTTCACGAAGATCTGCATGTTGA 4211 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | || |||||||| || ||||| ||||| || Sbjct 4670 CCACCACGCAGACGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCT 4611 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 |||||| || | ||||| ||||| || || ||| | || | | ||||||||| ||| Sbjct 4610 AGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGT 4551 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| || || | ||| Sbjct 4550 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGCTCTCGACC 4491 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| |||| || ||||| || || ||||| Sbjct 4490 TCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 4444 >seq103297 Length=6425 Score = 98.7 bits (108), Expect = 8e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| ||||| || |||||||| || ||||| ||||| ||| Sbjct 4654 CCACCACGGAGGCGGAGCACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGCC 4713 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| || | || || ||||||||||| || Sbjct 4714 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGG 4773 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATC 21115 | ||| |||||||| ||||| ||||| | | ||| ||||| Sbjct 4774 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTATC 4820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421714136476424