Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq44759 140 4e-28 seq87603 129 7e-25 seq50088 129 7e-25 seq85017 120 3e-22 seq59239 120 3e-22 seq50989 120 3e-22 seq103297 100 3e-16 seq17630 93.3 5e-14 seq1166 93.3 5e-14 >seq44759 Length=4973 Score = 140 bits (154), Expect = 4e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | || | |||||| || ||||||||| || ||||| || ||| Sbjct 4442 CCTCCCCTGAGACGAAGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 4383 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || | ||||||||||||||| ||||| ||||||||||| | || Sbjct 4382 AGCGTCCTACCATCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGA 4323 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || |||| ||| | | | ||||| || ||||| Sbjct 4322 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAAGACTCCAC 4264 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || | |||||||||||||| || |||||||| || ||||| ||||| || Sbjct 4263 CTCAAGGGTGATGGTTTTGCCGGTGAGCGTCTTCACGAAGATCTGCATGTT 4213 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || |||||||||||||| || Sbjct 4635 CTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAA 4576 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | ||||||||||||| || | | |||||||||| ||| || |||| | Sbjct 4575 GATCAACCGCTGCTGGTCGGGGGGTATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 4516 Query 43112 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | |||||| |||| || || |||| |||||||| ||||| ||||| ||||| Sbjct 4515 ATCGATCGTGTCGGAGCTC---TCGACCTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTT 4459 Query 43169 TACAAAGATTTGCAT 43183 || ||||| ||||| Sbjct 4458 GACGAAGATCTGCAT 4444 Score = 104 bits (114), Expect = 3e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||| | |||| |||||| || ||||| ||||| ||||| || || Sbjct 4898 CCACCCCTCAGACGAAGGACCAGATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCT 4839 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||| ||||| ||||| |||||||| || | || Sbjct 4838 AGGGTTCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGG 4779 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | | ||||||||| ||| || |||| ||| | | | |||||| ||| || Sbjct 4778 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAACTC---TC 4723 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | ||||||||| || || ||||| || || || ||||||||||| Sbjct 4722 AACTTCCAACGTGATGGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCAT 4672 >seq87603 Length=1014 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||||||||||||| | || |||||| ||||| ||||| || || Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| || || || || | |||||||||||||| ||| Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACTCAAC 902 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 903 CTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| ||||| ||||| || |||| || || | || || Sbjct 513 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTC 572 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||||||||| || || | ||||||||||| | || | || |||||||||| Sbjct 573 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 632 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | || || || || || || | ||||| || || Sbjct 633 GATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTT 692 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| |||||||| || || || ||||| Sbjct 693 GCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 129 bits (142), Expect = 7e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||||||||||||| | || |||||| ||||| ||||| || || Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| || || || || | |||||||||||||| ||| Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | || |||||||||| ||| || |||| ||| | | | |||||| || || || Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCAGAAGACTCAAC 770 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 771 CTCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||| | ||| |||||| ||||| ||||| || |||| || || | || || Sbjct 381 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTC 440 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||||||||| || || | ||||||||||| | || | || |||||||||| Sbjct 441 GAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTG 500 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || |||| | | | || || || || || || | ||||| || || Sbjct 501 GATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTT 560 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| |||||||| || || || ||||| Sbjct 561 GCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq85017 Length=850 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||||| |||||||| | || |||||| || || ||||| || ||| Sbjct 443 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 502 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||||||||||||||| || | ||||||||||| | ||| Sbjct 503 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 562 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| ||| | | | || ||| || || | Sbjct 563 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTCGA 620 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 621 CCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| ||||| || |||||| ||||| ||||| || || Sbjct 671 CCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCT 730 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||||||||| ||||| ||||||||||| | || Sbjct 731 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 790 Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099 | | |||||||||| ||| || Sbjct 791 ATACCCTCCTTGTCCTGGATCTT 813 >seq59239 Length=983 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||||| |||||||| | || |||||| || || ||||| || ||| Sbjct 576 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 635 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||||||||||||||| || | ||||||||||| | ||| Sbjct 636 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 695 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| ||| | | | || ||| || || | Sbjct 696 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTCGA 753 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 754 CCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| ||||| || |||||| ||||| ||||| || || Sbjct 804 CCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCT 863 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||||||||| ||||| ||||||||||| | || Sbjct 864 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 923 Query 43077 ACGCTCTCCTTGTCCATGATTTT 43099 | | |||||||||| ||| || Sbjct 924 ATACCCTCCTTGTCCTGGATCTT 946 >seq50989 Length=854 Score = 120 bits (132), Expect = 3e-22 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||||| |||||||| | || |||||| || || ||||| || ||| Sbjct 247 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 306 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||||||||||||||| || | ||||||||||| | ||| Sbjct 307 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 366 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 43134 | | |||||||||| ||| | || | |||| ||| | | | || ||| || || | Sbjct 367 ATACCCTCCTTGTCC-TGAATCTTAGCCTTGA-CGTTGTCGATGGTATCGGAAGACTCGA 424 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | || ||||| || |||||||| ||||| || ||||| ||||| Sbjct 425 CCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || || | ||||| |||| ||||| || |||||| ||||| ||||| || || Sbjct 475 CCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCT 534 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || ||||||||||||||||| ||||| ||||||||||| | || Sbjct 535 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 594 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || |||| ||| | | | ||||| || || || Sbjct 595 ATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAAGACTCGAC 653 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| || || ||||| || || || ||||| ||||| Sbjct 654 CTCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 701 >seq103297 Length=6425 Score = 100 bits (110), Expect = 3e-16 Identities = 136/187 (73%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| ||||| || |||||| || || ||||| || ||||| || ||| | || || Sbjct 4671 CACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCCTC 4730 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| |||||||| ||||| | ||||||||||| || | || |||||||||| | Sbjct 4731 CAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-T 4789 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || | || | || | | | | || || ||||| || |||| |||||||||| Sbjct 4790 GAATCTTGGCCTTCACATTGTCGATGGTATCCGAGGATTCAACCTCGAGGGTGATGGTTT 4849 Query 43153 TGCCCGT 43159 | ||||| Sbjct 4850 TCCCCGT 4856 >seq17630 Length=252 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| ||| | |||| ||||| || || |||||||| |||| |||| | || Sbjct 131 CGCAACACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAATCCGCCAACGTCCTCCCG 72 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||||||||||| || | ||||||||| || | || | || |||||| Sbjct 71 TCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCCGGTGGGATGCCCTCCTTA 12 Query 43089 TCCATGATTTT 43099 ||| ||| || Sbjct 11 TCCTGGATCTT 1 >seq1166 Length=240 Score = 93.3 bits (102), Expect = 5e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| ||| | || |||||| || || |||||||| |||| |||| | | Sbjct 73 CGCAACACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCCAACGTCCTCCCT 132 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || | |||||||||||||| || | ||||||||| |||| ||| | || |||||| Sbjct 133 TCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCGGGCGGGATGCCCTCCTTA 192 Query 43089 TCCATGATTTT 43099 ||| ||| || Sbjct 193 TCCTGGATCTT 203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571060556383920