Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq87603 86.0 5e-12 seq50088 86.0 5e-12 >seq87603 Length=1014 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||||| || |||||| || | ||||| |||| | || || | || Sbjct 739 AACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCC 798 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | || || |||||||| ||||||||||| || |||| ||| | || || || || Sbjct 799 TCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 858 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | ||||| || | | ||||| || ||| || || | || || || Sbjct 859 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGTC 918 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| |||||||| || || ||||| Sbjct 919 TTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42898 AACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCG 42957 ||||||||||||| || |||||| || | ||||| |||| | || || | || Sbjct 607 AACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCC 666 Query 42958 TCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCG 43017 || | || || |||||||| ||||||||||| || |||| ||| | || || || || Sbjct 667 TCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 726 Query 43018 CTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTT 43077 |||| | ||||| || | | ||||| || ||| || || | || || || Sbjct 727 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGTC 786 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||| |||||||| || || ||||| Sbjct 787 TTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380877317871012