Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq85017 131 4e-25 seq59239 131 4e-25 seq50989 131 4e-25 seq77395 113 1e-19 seq103297 100 7e-16 >seq85017 Length=850 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| | ||| | ||||| || ||||| || || ||||| Sbjct 440 ATCCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 499 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || ||||| || || || || || ||||| || || | || ||| || || || Sbjct 500 GCCAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGC 559 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || || || || | ||||||| || || Sbjct 560 GGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCG 619 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| |||||||| || || || || || || |||||||| Sbjct 620 ACCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| | ||| | ||||| || ||||| || || ||||| Sbjct 573 ATCCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 632 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || ||||| || || || || || ||||| || || | || ||| || || || Sbjct 633 GCCAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGC 692 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || || || || | ||||||| || || Sbjct 693 GGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCG 752 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| |||||||| || || || || || || |||||||| Sbjct 753 ACCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq50989 Length=854 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||||| | ||| | ||||| || ||||| || || ||||| Sbjct 244 ATCCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCG 303 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || ||||| || || || || || ||||| || || | || ||| || || || Sbjct 304 GCCAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGC 363 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| || || || || || | ||||||| || || Sbjct 364 GGGATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCG 423 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| |||||||| || || || || || || |||||||| Sbjct 424 ACCTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq77395 Length=9811 Score = 113 bits (124), Expect = 1e-19 Identities = 131/174 (75%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || ||||||| || |||| || || || || || || || Sbjct 1282 GTCGATTCCTTTTGGATGTTGTAGTCAGCCAGGGTTCGCCCATCCTCCAGCTGCTTGCCC 1341 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || |||||||| |||||||| || || || ||||| ||||||||||| || || Sbjct 1342 GCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCTTTGTCCTGAATCTTGGCCTTC 1401 Query 104483 ACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || | |||||| | ||| || ||||| || || || ||||| || || Sbjct 1402 ACATTGTCGATGGTATC-CGAGGACTCAACCTCGAGGGTGATGGTCTTCCCGGT 1454 >seq103297 Length=6425 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || || || || || || || ||||| || || ||||| | || || | || || Sbjct 4669 AGCACCAGGTGCAAGGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGCCCATCC 4728 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| || || |||||||| || || ||||| || || || || ||| Sbjct 4729 TCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 4788 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGT 104526 |||||||| || || ||||| || | |||||| | ||| ||| ||||| || || || || Sbjct 4789 TGAATCTTGGCCTTCACATTGTCGATGGTATC-CGAGGATTCAACCTCGAGGGTGATGGT 4847 Query 104527 CTTACCAGT 104535 || || || Sbjct 4848 TTTCCCCGT 4856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149835925745112