Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq87603 104 2e-17 seq85017 104 2e-17 seq59239 104 2e-17 seq50989 104 2e-17 seq50088 104 2e-17 seq102373 102 7e-17 seq44759 84.2 2e-11 >seq87603 Length=1014 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| | |||||| ||| |||||| ||||||||||| || ||| Sbjct 496 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 555 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||||||||| | | || ||||||||||| || || Sbjct 556 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 615 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | |||||||| | |||||| | Sbjct 616 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACC 675 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || ||||| || || || ||||||||||| Sbjct 676 TCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| || || |||||| ||||||||||| || || | |||| | ||| Sbjct 739 AACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCC 798 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | | || || |||||||| || ||| | | ||||||||| Sbjct 799 TCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 858 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||||| | | || || || || | |||||| ||| | || || | Sbjct 859 TGGATCTTGGCCTTGACGTTGTCG--ATCGTGTCAGAAGACTCAACCTCCAAGGTGATCG 916 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| || |||||||| Sbjct 917 TCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq85017 Length=850 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| || |||||||| || |||| ||| || | |||| Sbjct 461 ACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGC-GTC-CTACCATCCT 518 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| || | || || |||||||| || ||| | || ||||||||| Sbjct 519 CAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCCT 578 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| |||||| ||| | || ||||| Sbjct 579 GAATCTTAGCCTTGACGTTGTCG--ATGGTATCGGAAGACTCGACCTCTAGGGTAATGGT 636 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || |||||||| Sbjct 637 CTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || || || | |||||||||||||| || || Sbjct 250 CTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGA 308 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || || | | |||||||||| || || ||| | Sbjct 309 AGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGT 368 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||||| | ||| ||| | || ||||| || || |||||||| |||| Sbjct 369 TGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCA 428 Query 48714 CAAAAATCTGCATC 48727 | |||||||||||| Sbjct 429 CGAAAATCTGCATC 442 >seq59239 Length=983 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| || |||||||| || |||| ||| || | |||| Sbjct 594 ACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGC-GTC-CTACCATCCT 651 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| || | || || |||||||| || ||| | || ||||||||| Sbjct 652 CAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCCT 711 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| |||||| ||| | || ||||| Sbjct 712 GAATCTTAGCCTTGACGTTGTCG--ATGGTATCGGAAGACTCGACCTCTAGGGTAATGGT 769 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || |||||||| Sbjct 770 CTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || || || | |||||||||||||| || || Sbjct 383 CTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGA 441 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || || | | |||||||||| || || ||| | Sbjct 442 AGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGT 501 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||||| | ||| ||| | || ||||| || || |||||||| |||| Sbjct 502 TGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCA 561 Query 48714 CAAAAATCTGCATC 48727 | |||||||||||| Sbjct 562 CGAAAATCTGCATC 575 >seq50989 Length=854 Score = 104 bits (114), Expect = 2e-17 Identities = 154/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 || |||||||| || |||||| || |||||||| || |||| ||| || | |||| Sbjct 265 ACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGC-GTC-CTACCATCCT 322 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | ||||||||||| || | || || |||||||| || ||| | || ||||||||| Sbjct 323 CAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGGATACCCTCCTTGTCCT 382 Query 48636 TAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGT 48693 ||| || ||||| | | || |||||||||| |||||| ||| | || ||||| Sbjct 383 GAATCTTAGCCTTGACGTTGTCG--ATGGTATCGGAAGACTCGACCTCTAGGGTAATGGT 440 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || || || || |||||||| Sbjct 441 CTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || || || || || | |||||||||||||| || || Sbjct 54 CTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGA 112 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| || || | | |||||||||| || || ||| | Sbjct 113 AGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGT 172 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||||| | ||| ||| | || ||||| || || |||||||| |||| Sbjct 173 TGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCA 232 Query 48714 CAAAAATCTGCATC 48727 | |||||||||||| Sbjct 233 CGAAAATCTGCATC 246 >seq50088 Length=882 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| | |||||| ||| |||||| ||||||||||| || ||| Sbjct 364 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 423 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||||||||| | | || ||||||||||| || || Sbjct 424 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 483 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | | ||||||||| || || ||||| | | |||||||| | |||||| | Sbjct 484 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACC 543 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || || || || ||||| || || || ||||||||||| Sbjct 544 TCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 ||||| ||||| || || |||||| ||||||||||| || || | |||| | ||| Sbjct 607 AACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCC 666 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| | | || || |||||||| || ||| | | ||||||||| Sbjct 667 TCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCC 726 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||||| | | || || || || | |||||| ||| | || || | Sbjct 727 TGGATCTTGGCCTTGACGTTGTCG--ATCGTGTCAGAAGACTCAACCTCCAAGGTGATCG 784 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || |||||||| || |||||||| Sbjct 785 TCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 >seq102373 Length=7923 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | |||||| ||| |||||| ||||||||||| || || || || | ||||| Sbjct 7488 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCATCCTC 7547 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| ||| | | || ||||||||||||||| || | | ||||||||| Sbjct 7548 CAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTG 7607 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || |||||||| | | ||| ||| | || ||||| Sbjct 7608 GATCTTGGCCTTGACGTTGTCG--ATGGTATCCGAACTCTCGACCTCTAGGGTGATGGTC 7665 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || |||||||| || |||||||| Sbjct 7666 TTACCCGTTAGGGTTTTCACGAAGATCTGCAT 7697 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| | ||| || || |||||| || |||||||| || || | ||| | ||||| Sbjct 7716 CACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGTCCATCCTC 7775 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || || | || || | |||||||||| || | | |||||||| Sbjct 7776 CAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCTTG 7835 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | |||||||| | |||||| ||| | || ||||| || Sbjct 7836 GATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAACCTCTAGGGTAATGGTCTT 7895 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGC 48724 ||| |||||||| ||||| || || ||| Sbjct 7896 ACCCGTGAGAGTCTTCACGAAGATTTGC 7923 >seq44759 Length=4973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || || | ||| | |||||||||||||||||| || | Sbjct 4862 TCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCCAGCTGCTTACCGGCGAAG 4803 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | |||||||||||| || | || |||||||||| || || ||||| Sbjct 4802 ATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 4743 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| |||| | ||| || | || ||||| || || || || ||||| || Sbjct 4742 TCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTCTTCCCAGTTAGGGTTTTGACG 4683 Query 48716 AAAATCTGCAT 48726 || || ||||| Sbjct 4682 AAGATTTGCAT 4672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420707437629914