Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq6833 111 8e-20 seq62269 107 1e-18 seq100739 104 1e-17 seq57818 104 1e-17 seq75082 100 1e-16 seq12017 100 1e-16 seq102359 98.7 5e-16 seq102358 98.7 5e-16 seq47586 98.7 5e-16 seq48588 95.1 6e-15 seq38089 93.3 2e-14 seq46813 91.5 8e-14 seq23975 91.5 8e-14 seq14358 87.8 9e-13 seq103634 86.0 3e-12 seq98916 86.0 3e-12 seq74777 86.0 3e-12 seq73086 86.0 3e-12 seq92969 84.2 1e-11 seq84574 84.2 1e-11 seq98915 82.4 4e-11 seq43063 82.4 4e-11 >seq6833 Length=460 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| |||||||||| ||| | | |||||||| ||||||||||||||||||||||||| Sbjct 80 AAAAACCAAATTGGCCAATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 21 Query 11505 CTCTRACCAACTGAGCTAAT 11524 |||| ||||||||||||||| Sbjct 20 CTCTAACCAACTGAGCTAAT 1 >seq62269 Length=14959 Score = 107 bits (118), Expect = 1e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 13140 ATGAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCT 13081 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||| |||||||||| |||| Sbjct 13080 AACCAGCTGAGCTAATAGGCC 13060 >seq100739 Length=4877 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2633 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTGACCAAC 2574 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2573 TGAGCTAATAGGCC 2560 >seq57818 Length=8602 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5161 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5102 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5101 TGAGCTAATAGGCC 5088 >seq75082 Length=2923 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 1535 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 1594 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1595 TGAGCTAATAGGCC 1608 >seq12017 Length=242 Score = 100 bits (110), Expect = 1e-16 Identities = 63/69 (91%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | ||||||||||| ||||||| ||||||||||||||||||||| |||| | Sbjct 148 TGGCCCATGCAGGGATCGAACCTGCGACCTTTGCGTTATTAGCACGACGCTCTAACCAGC 207 Query 11516 TGAGCTAAT 11524 ||||||||| Sbjct 208 TGAGCTAAT 216 >seq102359 Length=732 Score = 98.7 bits (108), Expect = 5e-16 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 5 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCC 64 Query 11531 TCGACGATTGTGATTTTTCATCTAACCGA 11559 | || || |||||| | | ||| ||| Sbjct 65 TAGATGA---AGATTTTCCCTTTAATCGA 90 >seq102358 Length=783 Score = 98.7 bits (108), Expect = 5e-16 Identities = 75/89 (84%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 5 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCC 64 Query 11531 TCGACGATTGTGATTTTTCATCTAACCGA 11559 | || || |||||| | | ||| ||| Sbjct 65 TAGATGA---AGATTTTCCCTTTAATCGA 90 >seq47586 Length=3521 Score = 98.7 bits (108), Expect = 5e-16 Identities = 85/104 (82%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 11429 AAATATAG-AATTAATAAAA--AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCT 11485 |||||||| ||||||| ||| || || ||||| || | | |||||||| ||||| Sbjct 1262 AAATATAGGAATTAATTAAACTAAAAGAAATGGCCAATACAGGTCTCGAACCTATGACCT 1321 Query 11486 TCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 1322 TCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATTGGCC 1365 >seq48588 Length=711 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 163 TGGCCAATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 222 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 223 TGAGCTAATTGGCC 236 >seq38089 Length=7578 Score = 93.3 bits (102), Expect = 2e-14 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| |||| | Sbjct 6111 TGGCCCATGCAGGTTTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTGACCAGC 6170 Query 11516 TGAGCTAATGGGCCGTCGACGATTGTGAT 11544 ||||||||| |||| | ||| || |||| Sbjct 6171 TGAGCTAATAGGCCAT--ACGTTTTTGAT 6197 >seq46813 Length=860 Score = 91.5 bits (100), Expect = 8e-14 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||| ||||||| | |||| Sbjct 501 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACAACGCTCTAAACAAC 442 Query 11516 TGAGCTAAT 11524 ||||||||| Sbjct 441 TGAGCTAAT 433 >seq23975 Length=237 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 2 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 60 >seq14358 Length=256 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 62 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 3 Query 11516 TG 11517 || Sbjct 2 TG 1 >seq103634 Length=8286 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||| | | | |||||||| ||||||| ||||||||||||| ||||||| |||||| Sbjct 6925 TGGCCCACGCAGGTGTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAAC 6866 Query 11516 TGAGCTAATGGGCC 11529 ||||||| | |||| Sbjct 6865 TGAGCTAGTAGGCC 6852 >seq98916 Length=580 Score = 86.0 bits (94), Expect = 3e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| || |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 510 AAAAACAGGTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 569 Query 11506 TCTRACCAACT 11516 ||| |||| || Sbjct 570 TCTAACCAGCT 580 >seq74777 Length=10038 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| |||| |||| || | | |||||||| ||||||||||||||||||||||| Sbjct 3444 AAATAATAAAAT-GGCCAATACAGGTTTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 3502 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| || | |||||||||| |||| Sbjct 3503 GCTCTAACGAGCTGAGCTAATTGGCC 3528 >seq73086 Length=2498 Score = 86.0 bits (94), Expect = 3e-12 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 61 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2 Query 11516 T 11516 | Sbjct 1 T 1 >seq92969 Length=4396 Score = 84.2 bits (92), Expect = 1e-11 Identities = 72/88 (82%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAA--ATCAA--ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||| |||| |||| | ||| ||||||||| | | | |||||||| ||||||| ||| Sbjct 4309 AGAACTAATGAAAATGAACAACAATTGGCCCACGCAGGTGTCGAACCTGCGACCTTGGCG 4368 Query 11491 TTATTAGCACGACGCTCTRACCAACTGA 11518 |||||||||| ||||||| ||||||||| Sbjct 4369 TTATTAGCACCACGCTCTAACCAACTGA 4396 >seq84574 Length=2031 Score = 84.2 bits (92), Expect = 1e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| ||||||| ||||||||||||| ||||||| ||||||||||||| | ||||| Sbjct 2029 TCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAGTAGGCCG 1970 >seq98915 Length=575 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 514 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 573 Query 11515 CT 11516 || Sbjct 574 CT 575 >seq43063 Length=1048 Score = 82.4 bits (90), Expect = 4e-11 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||| |||||||||||||||||||||||||||| |||| |||||||||| Sbjct 825 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTGACCAGCTGAGCTAAT 772 Lambda K H 0.637 0.409 0.918 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261153660131464