Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq87603 120 3e-22 seq50088 120 3e-22 seq44759 114 1e-20 seq102373 111 1e-19 seq50989 104 2e-17 seq85017 102 7e-17 seq59239 102 7e-17 seq77395 82.4 7e-11 >seq87603 Length=1014 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||||||||| || | || || ||||| || | ||| || ||| ||| ||| | Sbjct 736 CGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC--TAGGGTTCGCC 793 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| ||||| || ||| ||||||| |||| ||||| || || ||||| || || | Sbjct 794 CATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCT 853 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||||||| | ||| ||||||| || || || | |||| Sbjct 854 TGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGA 913 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || ||||| || |||||||| ||||||||||| Sbjct 914 TCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA- 94851 ||||||||||| || | || || ||||| || | ||| || ||| ||| ||| | Sbjct 604 CGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGC--TAGGGTTCGCC 661 Query 94852 -ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 |||||| ||||| || ||| ||||||| |||| ||||| || || ||||| || || | Sbjct 662 CATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCT 721 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 |||| | || || ||||||||| | ||| ||||||| || || || | |||| Sbjct 722 TGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGA 781 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || ||||| || |||||||| ||||||||||| Sbjct 782 TCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 >seq44759 Length=4973 Score = 114 bits (126), Expect = 1e-20 Identities = 170/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || || |||| || | |||| ||||| || |||||||| || | ||| | Sbjct 4906 TTTGCATACCACCCCTCAGACGAAGGACCAGATGCAACGTTGATTCCTTCTGAATGTTGT 4847 Query 94833 AATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTG 94890 | ||| ||| ||| | |||||||||||| || ||| | ||||| | | ||||| Sbjct 4846 AGTCGGC--TAGGGTTCGGCCATCCTCCAGCTGCTTACCGGCGAAGATGAGACGCTGCTG 4789 Query 94891 ATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGC 94950 ||| || || |||||||| ||||| | || || ||||||||| | | | ||||| | Sbjct 4788 ATCAGGTGGGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGA 4729 Query 94951 GTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || | ||||||||| || ||||| || ||||| || ||||| ||||||| Sbjct 4728 ACTCTCAACTTCCAACGTGATGGTCTTCCCAGTTAGGGTTTTGACGAAGATTTGCATGC 4670 Score = 105 bits (116), Expect = 6e-18 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| ||| | ||||| ||||| || | ||| || ||| ||| ||| | |||| Sbjct 4653 CACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGC--TAGGGTTCGGCCATCC 4596 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || ||||| || || ||||||| || | ||||| || || || ||||| || ||||| Sbjct 4595 TCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGGTCGGGGGGTATACCCTCCTTGTCC 4536 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| ||| ||||| | | ||||| || | |||||||| Sbjct 4535 TGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTGATGGTC 4476 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || || || || ||||||||||||| Sbjct 4475 TTGCCAGTTAGGGTCTTGACGAAGATCTGCATGC 4442 Score = 98.7 bits (108), Expect = 9e-16 Identities = 148/209 (71%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| ||||| || || |||||||| | ||| || ||| || || | ||| |||| Sbjct 4423 CAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATCTTCCA 4364 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 ||| || || | ||||| | | ||||| || || ||||| || || ||||| | | Sbjct 4363 ACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGA 4304 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||||||| | ||| ||||| | || || |||| ||||||||||| | Sbjct 4303 TCTTGGCCTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTGC 4244 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || || ||||| |||||||||||| Sbjct 4243 CGGTGAGCGTCTTCACGAAGATCTGCATG 4215 >seq102373 Length=7923 Score = 111 bits (122), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | ||| || ||||| || | ||| || || | | || || || |||| Sbjct 7488 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTC-CGCTAAG-GTACGACCATCC 7545 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||| ||| || ||| ||||||| || | |||||||| |||||||| || || ||||| Sbjct 7546 TCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCC 7605 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| | ||| || || | ||||| || | |||||||| Sbjct 7606 TGGATCTTGGCCTTGACGTTGTCGATGGTATCCGAACTCTCGACCTCTAGGGTGATGGTC 7665 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || |||||||| ||||||||||||| Sbjct 7666 TTACCCGTTAGGGTTTTCACGAAGATCTGCATGC 7699 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/210 (70%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||| || | || || ||||| || | ||| || ||| ||| ||| | |||| Sbjct 7716 CACCAGATGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC--TAGGGTTCGTCCATCC 7773 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || | ||||| ||||| |||||||| |||||||| || || ||||| Sbjct 7774 TCCAGCTGCTTGCCCGCGAAGATCAATCTCTGCTGATCCGGAGGAATGCCCTCCTTGTCT 7833 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | || || ||||||||| | | | || || | || || || | || ||||| Sbjct 7834 TGGATCTTAGCCTTGACGTTGTCAATGGTATCCGAAGACTCAACCTCTAGGGTAATGGTC 7893 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || || ||||| ||||| ||||| ||| Sbjct 7894 TTACCCGTGAGAGTCTTCACGAAGATTTGC 7923 >seq50989 Length=854 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||| |||||| || || ||||| || | ||| || ||| | || | | Sbjct 487 CGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCA 546 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || || || ||||| || ||| Sbjct 547 TCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 606 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||||||| | | | ||||||| ||||| |||| |||||| Sbjct 607 TCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATG 666 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || ||||| || ||||||||||||| Sbjct 667 GTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCATGC 703 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||| ||||| || | ||| || ||| | ||| | ||||||| Sbjct 37 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 96 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || |||||||| ||||| ||||| | Sbjct 97 AGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 156 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | | | ||| || | || || || | |||||||| ||| Sbjct 157 ATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTCTTT 216 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || |||||||| Sbjct 217 CCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| ||||| || | ||||| ||||| || | ||| || ||| | Sbjct 247 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 306 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| || || | ||||| || | ||||| ||||| || Sbjct 307 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 366 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||| || ||||||||| | ||| || || | ||||| Sbjct 367 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACC 426 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || || || || || || || ||||||||||| Sbjct 427 TCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq85017 Length=850 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||| ||||| || | ||| || ||| | ||| | ||||||| Sbjct 233 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 292 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || |||||||| ||||| ||||| | Sbjct 293 AGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 352 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | | | ||| || | || || || | |||||||| ||| Sbjct 353 ATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTCTTT 412 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || |||||||| Sbjct 413 CCAGTGAGAGTCTTCACGAAAATCTGCAT 441 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| ||||| || | ||||| ||||| || | ||| || ||| | Sbjct 443 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 502 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| || || | ||||| || | ||||| ||||| || Sbjct 503 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 562 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||| || ||||||||| | ||| || || | ||||| Sbjct 563 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACC 622 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || || || || || || || ||||||||||| Sbjct 623 TCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||| ||||| || | ||| || ||| | ||| | ||||||| Sbjct 366 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCCTCC 425 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || || | ||||| | | ||||| || |||||||| ||||| ||||| | Sbjct 426 AGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGG 485 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | | | ||| || | || || || | |||||||| ||| Sbjct 486 ATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGGTCTTT 545 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| ||||| || |||||||| Sbjct 546 CCAGTGAGAGTCTTCACGAAAATCTGCAT 574 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 ||||| || | |||| ||||| || | ||||| ||||| || | ||| || ||| | Sbjct 576 CCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCC 635 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | |||||| ||||| || || | ||||| || | ||||| ||||| || Sbjct 636 AGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGGG 695 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | ||| || ||||||||| | ||| || || | ||||| Sbjct 696 ATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACC 755 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||| || || || || || || || ||||||||||| Sbjct 756 TCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq77395 Length=9811 Score = 82.4 bits (90), Expect = 7e-11 Identities = 132/188 (70%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||| | ||||| ||| ||||||||||| | ||| || || || | ||| | |||| Sbjct 1269 CACGAGGTGCAGAGTCGATTCCTTTTGGATGTTGTAGTCAGCCA--GGGTTCGCCCATCC 1326 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 |||||||| || || ||||||| | || |||||||| || || || || |||||||| Sbjct 1327 TCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCTTTGTCC 1386 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||| || ||||| || | ||| || || | | || || || | |||||||| Sbjct 1387 TGAATCTTGGCCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCGAGGGTGATGGTC 1446 Query 94976 TTTCCAGT 94983 || || || Sbjct 1447 TTCCCGGT 1454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447697696073040