Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq41930 131 3e-26 seq101223 118 2e-22 seq71562 113 7e-21 seq57421 113 7e-21 seq56186 113 7e-21 seq105790 100 4e-17 seq83829 100 4e-17 seq70898 100 4e-17 seq98575 95.1 2e-15 seq103577 86.0 1e-12 seq56700 86.0 1e-12 seq101714 80.6 4e-11 >seq41930 Length=6722 Score = 131 bits (144), Expect = 3e-26 Identities = 164/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 3614 CGCCAAGAGGCATCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCCGCGAT 3555 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | |||||||||||| | || || ||||||||| || || | |||| || |||| Sbjct 3554 CAGGCGTCTGGCTCGTAGGGGCGGCGTCAAGCGTATCAGCGGGCTCATCTACGAGGAGAC 3495 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| ||| | ||||||||||| ||| || |||| || || || ||| ||||| Sbjct 3494 CCGTGGTGTGCTCAAGATCTTCCTTGAGAATGTCATCCGCGACGCAGTCACCTACACCGA 3435 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | ||||| |||||| ||||||| ||||||| || Sbjct 3434 ACACGCTCGCAGGAAGACGGTCACCGCCATGGACGTCGTCTACGC 3390 >seq101223 Length=1021 Score = 118 bits (130), Expect = 2e-22 Identities = 172/242 (71%), Gaps = 6/242 (2%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || || ||||| ||||| | ||| Sbjct 815 CTCCGTGACAACATCCAGGGCATCACCAAGCCCGCAATTCGGCGTCTAGCTCGCAGGGGT 756 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || ||||| || ||| | |||| ||||| | |||| ||| | ||||||||| Sbjct 755 GGCGTGAAGCGCATCAGTGGGCTCATCTACGAAGAAACCCGTGGCGTTCTCAAGATCTTC 696 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGT---AAGACT 16630 || ||| || |||| |||||| || || || |||||||| |||| ||||| Sbjct 695 CTTGAGAATGTCATCCGTGATGCCGTCACGTACACGGAGCACGC---ACGTAGAAAGACG 639 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 || ||| | ||||| ||||||| || | || | || ||| | | |||||||||| Sbjct 638 GTGACCGCGATGGACGTCGTCTACGCGCTCAAGAGGCAGGGCAGGACCCTTTATGGTTTC 579 Query 16691 GG 16692 || Sbjct 578 GG 577 >seq71562 Length=636 Score = 113 bits (124), Expect = 7e-21 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 209 CGCCAAGAGGCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCAAT 268 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || | || || |||||||| || ||| | | || || |||| Sbjct 269 TCGGCGTCTGGCACGCAGGGGCGGCGTCAAGCGCATCAGTGGTCTCATTTACGAGGAGAC 328 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | |||||||||||| ||| ||| |||| || || || ||||| || Sbjct 329 TCGTGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACATATACGGA 388 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | ||||| ||||| | ||||| ||||||| || Sbjct 389 GCACGCCCGCAGGAAGACGGTCACTGCTATGGACGTCGTCTACGC 433 >seq57421 Length=844 Score = 113 bits (124), Expect = 7e-21 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 716 CGCCAAGAGGCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCAAT 657 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || | || || |||||||| || ||| | | || || |||| Sbjct 656 TCGGCGTCTGGCACGCAGGGGCGGCGTCAAGCGCATCAGTGGTCTCATTTACGAGGAGAC 597 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | |||||||||||| ||| ||| |||| || || || ||||| || Sbjct 596 TCGTGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACATATACGGA 537 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | ||||| ||||| | ||||| ||||||| || Sbjct 536 GCACGCCCGCAGGAAGACGGTCACTGCTATGGACGTCGTCTACGC 492 >seq56186 Length=715 Score = 113 bits (124), Expect = 7e-21 Identities = 160/225 (71%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 129 CGCCAAGAGGCATCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCAAT 188 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || | || || |||||||| || ||| | | || || |||| Sbjct 189 TCGGCGTCTGGCACGCAGGGGCGGCGTCAAGCGCATCAGTGGTCTCATTTACGAGGAGAC 248 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| || | |||||||||||| ||| ||| |||| || || || ||||| || Sbjct 249 TCGTGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACATATACGGA 308 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | ||||| ||||| | ||||| ||||||| || Sbjct 309 GCACGCCCGCAGGAAGACGGTCACTGCTATGGACGTCGTCTACGC 353 >seq105790 Length=1569 Score = 100 bits (110), Expect = 4e-17 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 1522 CGCCAAGAGGCATCGCAAGGTACTGCGCGACAACATCCAGGGCATCACCAAGCCCGCAAT 1463 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| | || || || ||||| || || | |||| || |||| Sbjct 1462 CCGGCGTCTCGCTCGCAGGGGAGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 1403 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||||||||||| ||| || || | ||| ||| || || || || Sbjct 1402 GCGCGGCGTTCTCAAGATCTTCCTTGAGAATGTCATTCGTGACGCTGTCACATACACGGA 1343 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| || | ||||| || ||| ||||||| ||||||| || Sbjct 1342 GCATGCACGCAGGAAGACGGTGACCGCCATGGACGTCGTCTACGC 1298 >seq83829 Length=561 Score = 100 bits (110), Expect = 4e-17 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 216 CGCCAAGAGGCATCGCAAGGTACTGCGCGACAACATCCAGGGCATCACCAAGCCCGCAAT 275 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| | || || || ||||| || || | |||| || |||| Sbjct 276 CCGGCGTCTCGCTCGCAGGGGAGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 335 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||||||||||| ||| || || | ||| ||| || || || || Sbjct 336 GCGCGGCGTTCTCAAGATCTTCCTTGAGAATGTCATTCGTGACGCTGTCACATACACGGA 395 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| || | ||||| || ||| ||||||| ||||||| || Sbjct 396 GCATGCACGCAGGAAGACGGTGACCGCCATGGACGTCGTCTACGC 440 >seq70898 Length=856 Score = 100 bits (110), Expect = 4e-17 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || |||||||| || ||||||||||| || || Sbjct 511 CGCCAAGAGGCATCGCAAGGTACTGCGCGACAACATCCAGGGCATCACCAAGCCCGCAAT 570 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| | || || || ||||| || || | |||| || |||| Sbjct 571 CCGGCGTCTCGCTCGCAGGGGAGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 630 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||||||||||| ||| || || | ||| ||| || || || || Sbjct 631 GCGCGGCGTTCTCAAGATCTTCCTTGAGAATGTCATTCGTGACGCTGTCACATACACGGA 690 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 ||| || | ||||| || ||| ||||||| ||||||| || Sbjct 691 GCATGCACGCAGGAAGACGGTGACCGCCATGGACGTCGTCTACGC 735 >seq98575 Length=1662 Score = 95.1 bits (104), Expect = 2e-15 Identities = 156/225 (69%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| || || || ||||| || || || |||||||| || || Sbjct 750 CGCCAAGAGGCATCGCAAGGTGCTGCGCGACAACATTCAGGGCATTACCAAGCCCGCCAT 691 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || | || ||||| ||||| || || | |||| || |||| Sbjct 690 TCGCCGTCTGGCGCGCAGGGGCGGAGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 631 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | |||||||||||| ||| ||| ||| || || || ||||| || Sbjct 630 TCGAGGAGTTCTCAAGATCTTCCTCGAGAACGTCATCAGAGACGCCGTCACATATACGGA 571 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 || || | ||||| || || |||||||| ||||||| || Sbjct 570 ACATGCGCGCAGGAAGACAGTGACGGCCATGGATGTCGTCTACGC 526 >seq103577 Length=5432 Score = 86.0 bits (94), Expect = 1e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| | | | || || |||||||| || ||||||||||| || || Sbjct 496 CGCCAAGAGGCATCGCAAAGTTTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 555 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | | ||||| | || || || ||||| || || | |||| || |||| Sbjct 556 CCGCAGGTTAGCTCGCAGGGGCGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 615 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || || || Sbjct 616 GCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACTTACACGGA 675 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | ||||| || ||| | ||||| | ||||| || Sbjct 676 GCACGCGCGCAGGAAGACGGTAACCGCTATGGACGTTGTCTACGC 720 >seq56700 Length=5461 Score = 86.0 bits (94), Expect = 1e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| | | | || || |||||||| || ||||||||||| || || Sbjct 4966 CGCCAAGAGGCATCGCAAAGTTTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCGAT 4907 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| | | ||||| | || || || ||||| || || | |||| || |||| Sbjct 4906 CCGCAGGTTAGCTCGCAGGGGCGGCGTGAAGCGCATCAGCGGGCTCATCTACGAGGAGAC 4847 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | |||||||||||| ||| ||| |||| || || || || || || Sbjct 4846 GCGCGGCGTCCTCAAGATCTTCCTCGAGAACGTCATCCGCGACGCCGTCACTTACACGGA 4787 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGC 16656 |||||| | ||||| || ||| | ||||| | ||||| || Sbjct 4786 GCACGCGCGCAGGAAGACGGTAACCGCTATGGACGTTGTCTACGC 4742 >seq101714 Length=4381 Score = 80.6 bits (88), Expect = 4e-11 Identities = 175/262 (67%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||| | |||||| || ||||| ||||| ||||| |||||||| || Sbjct 1688 CGCCAAGAGGCATCGTAAGGTTCTTCGGGACAACATTCAAGGTATCACAAAGCCAGCAAT 1747 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | ||||| |||||| | || || || ||||| || ||| | | || || || | Sbjct 1748 TAGGCGTCTAGCTCGTAGAGGCGGCGTGAAGCGCATCGGTGGCCTCATTTACGAGGAAAC 1807 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | ||||||||||| ||| || || || || || || || || Sbjct 1808 CAGGGGAGTTCTCTAGATCTTCCTCGAGAATGTCATTGGCGACGCAGTCACATACACGGA 1867 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| | || ||||| || ||||||| ||||||| || |||| | || || Sbjct 1868 ACACGCCCGCAGGAAAACTGTGACGGCCATGGACGTCGTCTACGCCCTGAAGAGGCAGGG 1927 Query 16672 CCGTAAGATTTATGGTTTTGGA 16693 | | | |||| || |||||| Sbjct 1928 CAGGACACTTTACGGATTTGGA 1949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78978362088402