Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq77036 100 7e-16 seq103020 93.3 1e-13 >seq77036 Length=9932 Score = 100 bits (110), Expect = 7e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| || |||||||| || | || ||| | || | || || | || | Sbjct 3458 ATGAAGGAAGACAGTATCGAGGGGATATACGATACATTGAAAGAGTGCGCAGTGATCAGC 3399 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATT 363741 || || ||||| ||||| | ||||||||||| | || ||| || ||| |||||| Sbjct 3398 AAATCCGCTGGCGGTATTGGCTTGTCGATCCACAACATACGAGCAACGAGCAGCTACATT 3339 Query 363742 CGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| || |||| | || ||| | ||||| ||||| || |||| | |||| Sbjct 3338 CGTGGTACAAATGG-TACTTCAAACGGGATCGTTCCGATGCTGCGGGTGTACAATGATAC 3280 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || |||||||||| ||||||||||| || |||||||| Sbjct 3279 AGCTCGGTACGTCGATCAGGGTGGAGGCAAACGCAAAGG 3241 >seq103020 Length=5539 Score = 93.3 bits (102), Expect = 1e-13 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| || |||||||| || || || || |||| || || | ||| | Sbjct 4588 TTGCTTTCTCGTATGTATGAAGGATGACAGTATTGAAGGCATCTACGATACGTTGAAGGA 4529 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 ||||| | || ||| || || || ||||| | ||||||||||| | || || Sbjct 4528 GTGTGCGGTGATCAGCAAATCCGCTGGTGGTATTGGCTTGTCGATCCACAACATACGGGC 4469 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACT-CGAATGGGCTGGTTCCCATGCTTC 363784 || ||| |||||||| || ||| || |||| | || ||| | ||||| ||| | | Sbjct 4468 GACGAGCAGCTACATTCGTGGTACAAATGG-TACTTCAAACGGGATAGTTCCGATGTTGC 4410 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 | |||| || |||| || | ||||| || ||||||||||| ||||||||||| Sbjct 4409 GAGTGTACAACGATACCGCTCGCTACGTTGATCAGGGTGGAGGCAAGCGCAAAGG 4355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1301584919024748