Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq44759 104 2e-17 seq50989 89.7 4e-13 seq85017 87.8 1e-12 seq59239 87.8 1e-12 seq77395 84.2 2e-11 seq87603 82.4 6e-11 seq50088 82.4 6e-11 >seq44759 Length=4973 Score = 104 bits (114), Expect = 2e-17 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||||| || ||||||||||| |||||||||||||||| || | | || Sbjct 4427 AGGACAAGATGCAAGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATCT 4368 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 ||||| || || || || | || || ||||| |||||| || | |||||| ||||| Sbjct 4367 TCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCC 4308 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | |||| || | |||||||| Sbjct 4307 TGGATCTTGGC--CTTGACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGG 4250 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||| ||||| || || || |||||||| ||| Sbjct 4249 TTTTGCCGGTGAGCGTCTTCACGAAGATCTGCATGTTG 4212 >seq50989 Length=854 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 |||||||| |||| ||| |||||||| || |||||||||||||| | ||| | | || Sbjct 489 CAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCATC 548 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||| | || || || || | || || ||||| ||||| || | ||||| ||||| Sbjct 549 CTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 608 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || ||| || | | | | ||||| | ||| || | ||||||| Sbjct 609 CTGGATCTTGGC--CTTGACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATG 666 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || |||||||| || |||||||| Sbjct 667 GTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 701 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || |||||||||||||| | ||| | | ||| Sbjct 34 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 93 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || | || || ||||| ||||| ||| | || || ||||| Sbjct 94 TCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 153 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||| ||| ||| |||| |||||||| Sbjct 154 TGGATCTTGGC--CTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGG 211 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || || || ||||||||||| Sbjct 212 TCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | |||||||| ||| ||||| |||||||| || |||||||||||||| Sbjct 246 CCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGC 305 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || || | || | |||||| ||||| || Sbjct 306 CAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGG 365 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| | ||| || | | | | || ||| | ||| Sbjct 366 GATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 425 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || ||||| || |||||||| Sbjct 426 CTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq85017 Length=850 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || |||||||||||||| | ||| | | ||| Sbjct 230 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 289 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || | || || ||||| ||||| ||| | || || ||||| Sbjct 290 TCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 349 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||| ||| ||| |||| |||||||| Sbjct 350 TGGATCTTGGC--CTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGG 407 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || || || ||||||||||| Sbjct 408 TCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | |||||||| ||| ||||| |||||||| || |||||||||||||| Sbjct 442 CCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGC 501 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || || | || | |||||| ||||| || Sbjct 502 CAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGG 561 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| | ||| || | | | | || ||| | ||| Sbjct 562 GATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 621 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || ||||| || |||||||| Sbjct 622 CTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || || |||||||| || |||||||||||||| | ||| | | ||| Sbjct 363 AGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCATCC 422 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||| || || || || | || || ||||| ||||| ||| | || || ||||| Sbjct 423 TCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC 482 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||| ||| ||| |||| |||||||| Sbjct 483 TGGATCTTGGC--CTTAACGTTGTCAATAGTATCGGAACTCTCAACCTCCAAGGTGATGG 540 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || || || ||||||||||| Sbjct 541 TCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | |||||||| ||| ||||| |||||||| || |||||||||||||| Sbjct 575 CCCTCCCCTGAGACGCAGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGC 634 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || || | || | |||||| ||||| || Sbjct 635 CAGCGTCCTACCATCCTCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGGTCTGGCGG 694 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| ||| | ||| || | | | | || ||| | ||| Sbjct 695 GATACCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGAC 754 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || || || || || ||||| || |||||||| Sbjct 755 CTCTAGGGTAATGGTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq77395 Length=9811 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || || |||||||| ||||||||||| |||| |||| | ||||||| || Sbjct 1276 TGCAGAGTCGATTCCTTTTGGATGTTGTAGTCAGCCAGGGTTCGCCCATCCTCCAGCTGC 1335 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 ||||||||| | || |||| ||| || || || | ||||||||||| ||| | Sbjct 1336 TTGCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGGATCCCCTCTTTGTCCTGAATCTTG 1395 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || || || ||| || | ||||||||| || |||||| Sbjct 1396 GCCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCGAGGGTGATGGTCTTCCCGGTC 1455 Query 16913 A 16913 | Sbjct 1456 A 1456 >seq87603 Length=1014 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| ||||| |||||||| || |||||||||||||| | |||| | ||||| Sbjct 742 ACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCCTCG 801 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | || || || ||| | || | ||||| ||||| || | |||||| ||||| || Sbjct 802 AGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 861 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || ||| || | | | | ||||| | ||| |||| |||||| || | Sbjct 862 ATCTTGGC--CTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGTCT 919 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || ||||| || || |||||||| Sbjct 920 TGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/211 (69%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 16727 ACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCC 16786 |||| ||| ||||| |||||||| || |||||||||||||| | |||| | ||||| Sbjct 610 ACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATCCTCG 669 Query 16787 AATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GG 16844 | || || || ||| | || | ||||| ||||| || | |||||| ||||| || Sbjct 670 AGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTCCTGG 729 Query 16845 CAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTT 16904 || || ||| || | | | | ||||| | ||| |||| |||||| || | Sbjct 730 ATCTTGGC--CTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGTCT 787 Query 16905 TTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || || || ||||| || || |||||||| Sbjct 788 TGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404565101522860