Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq73751 127 1e-24 seq38399 122 6e-23 seq72671 113 3e-20 seq102373 111 1e-19 seq4010 104 2e-17 seq74168 102 5e-17 seq57049 102 5e-17 seq56874 102 5e-17 seq104960 93.3 3e-14 seq54570 93.3 3e-14 seq62143 89.7 3e-13 seq37516 87.8 1e-12 seq87603 86.0 4e-12 seq50088 86.0 4e-12 seq5924 82.4 5e-11 >seq73751 Length=441 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||| ||||||||||||||||||||||||||||||||| || |||||||| Sbjct 244 AAGCCCATTCACTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 185 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || ||||||||||||||||||||||||| Sbjct 184 TAATCCATTAATGCGCGTCACTAATTAGATGACGA 150 >seq38399 Length=235 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||| |||||||||||||||||||||||||||| | |||||||| Sbjct 93 AAGCTCGTTCCCTTGCCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGAGAATCTCGT 152 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||| ||||||||||||||| Sbjct 153 TAATCCATTCATGCGCGTCGCTAATTAGATGACGA 187 >seq72671 Length=525 Score = 113 bits (124), Expect = 3e-20 Identities = 79/90 (88%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25905 CCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAA 25959 |||||||||||||||||||||| |||||||||||||||||| || ||||||||||| Sbjct 178 CCCGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAA 119 Query 25960 TCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||| ||||||| | ||| |||||||||||| Sbjct 118 TCCATTCATGCACATCATTAATTAGATGAC 89 >seq102373 Length=7923 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| |||||||||| |||||| ||||| ||||| || | || ||| | || || Sbjct 7488 CACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCTAAGGTACGACCATCCTC 7547 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || || || |||||||| || | || || ||||| | || | ||| || |||||| Sbjct 7548 CAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGAATGCCCTCCTTGTCCTG 7607 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||| || || | || ||||| ||| || || |||| || || || || Sbjct 7608 GATCTTGGCCTTGACGTTGTCGATGGTATCCGAACTCTCGACCTCTAGGGTGATGGTCTT 7667 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||| | |||||||||||| ||||||||| Sbjct 7668 ACCCGTTAGGGTTTTCACGAAGATCTGCATG 7698 >seq4010 Length=475 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 388 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 329 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 328 GCCGGTATTTAGCCTTA 312 >seq74168 Length=922 Score = 102 bits (112), Expect = 5e-17 Identities = 76/88 (86%), Gaps = 7/88 (8%) Strand=Plus/Plus Query 25911 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTT 25965 ||||||||||||| ||||||||||||||||||||| || |||||||||||||| || Sbjct 201 CCCTTGGCTGTGGATTCGCTAGATAGTAGATAGGGACGGTGGGAATCTCGTTAATCCATT 260 Query 25966 CATGCGCGTCAC--TAATTAGATGACGA 25991 |||||| ||||| ||||||||| |||| Sbjct 261 CATGCGAGTCACTATAATTAGATCACGA 288 >seq57049 Length=334 Score = 102 bits (112), Expect = 5e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 103 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTAGTTGTTCGCTATCGGTCTCTT 44 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 43 GCCAGTATTTAGCCTT 28 >seq56874 Length=373 Score = 102 bits (112), Expect = 5e-17 Identities = 71/81 (88%), Gaps = 5/81 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 || ||||||||||||||||||||||| ||||||| ||||||||| || |||||||| Sbjct 219 AACCCCGTTCCCTTGGCTGTGGTTTCACTAGATAATAGATAGGGACAGTGGGAATCTCGT 278 Query 25957 TAATCCTTTCATGCGCGTCAC 25977 |||||| |||||||||||||| Sbjct 279 TAATCCATTCATGCGCGTCAC 299 >seq104960 Length=3654 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||| || |||||||||||| Sbjct 707 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTATTTGCTATCGGTCTCTT 766 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 767 GCCAGTATTTAGCCTT 782 >seq54570 Length=557 Score = 93.3 bits (102), Expect = 3e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||||||||||||||| Sbjct 381 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGTGGTACTTGTTCGCTATCGGTCTCTT 322 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 321 GTCTATATTTAGCCTT 306 >seq62143 Length=320 Score = 89.7 bits (98), Expect = 3e-13 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 20003 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| Sbjct 57 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCT 1 >seq37516 Length=210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| ||||| |||||| Sbjct 13 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATTGGTCTCTT 72 Query 20007 GGTAATATTTAGCCTT 20022 | | ||||||||||| Sbjct 73 GCCAGTATTTAGCCTT 88 >seq87603 Length=1014 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||||||||||||||| || || |||||| ||||| ||||| || | Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || | || || || |||| || Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || || | || || || | ||||| Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 903 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | |||||||||||| |||||||| Sbjct 904 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||||||||||||||| || || |||||| ||||| ||||| || | Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || | || || || |||| || Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| || || | || || || | ||||| Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 771 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || | |||||||||||| |||||||| Sbjct 772 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 >seq5924 Length=6762 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 5/90 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||| | ||| |||||| |||||| | |||||||| || |||||| | Sbjct 6432 AAGCCCATTCCCCTAGCTATGGTTTTGCTAGAGAATAGATAGGAACTACGGGAATCTCAT 6373 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 |||||| ||||||| | ||||||||||||| Sbjct 6372 TAATCCATTCATGCACATCACTAATTAGAT 6343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334514841152534