Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq41741 98.7 1e-15 seq96240 96.9 4e-15 seq90863 96.9 4e-15 seq88851 91.5 2e-13 seq105567 84.2 2e-11 seq52146 82.4 8e-11 >seq41741 Length=6628 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 5361 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTACCGAGGGCG 5302 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||| |||||||| Sbjct 5301 TGGGTTCGAACCCCACTTCTGACAAA 5276 >seq96240 Length=4500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 74/87 (85%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| || ||| | ||| Sbjct 3492 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTATCGAGGGCG 3551 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||| |||||| || Sbjct 3552 TGGGTTCGAACCCCACTTCTGACATAT 3578 >seq90863 Length=387 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/85 (86%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 295 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 236 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||| |||||| Sbjct 235 GTGGGTTCGAACCCCACTTCTGACA 211 >seq88851 Length=6035 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 ||||||| |||||||||||||||||||||||| || | | ||||| | | | |||| Sbjct 3006 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGTTTCAGGTACTGGTCCGTAAGAGGGCGT 2947 Query 126325 GGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||| ||||||||| Sbjct 2946 GGGTTCGAACCCCACTCCTGACAAA 2922 >seq105567 Length=3887 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGC 126322 ||||||||| |||||||||||||||||||||||| || | | ||||| || | || Sbjct 2787 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGTTTCAGGTACTGGT--CCGAAAGGGC 2730 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||||||||||||| |||||| || Sbjct 2729 GTGGGTTCGAACCCCACTTCTGACAGAT 2702 >seq52146 Length=4434 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 ||||||| |||||||||||||||||||||||| || | | ||||||| | |||| Sbjct 4234 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGTTTCAGGTACTGGTTCGTAAAAGGGCGT 4293 Query 126325 GGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||| |||||| Sbjct 4294 GGGTTCGAACCCCACTTCTGACA 4316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556123558065360