Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq102373 116 3e-21 seq44759 116 3e-21 seq50989 107 2e-18 seq87603 100 2e-16 seq50088 100 2e-16 seq103297 93.3 4e-14 seq85017 82.4 6e-11 seq59239 82.4 6e-11 >seq102373 Length=7923 Score = 116 bits (128), Expect = 3e-21 Identities = 178/252 (71%), Gaps = 4/252 (2%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| ||||| || |||| || || || || | | Sbjct 7697 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATCACCCTAGAGGTCGAGAGTTCG 7638 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || || || ||||||||||| ||||| || ||||| Sbjct 7637 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCTCCGGATCAG 7578 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || |||||||| || ||||| |||||| || ||| | | || |||||| Sbjct 7577 CAGCGTTTGATCTTTGCCGGGAAGCAGTTGGAGGATGGTCGTACCTTAGCGGACTACAAC 7518 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTTAA 22458 ||||| || || ||||| | ||| | || | || | || ||||| | | |||||| Sbjct 7517 ATTCAGAAGGAGTCCACTCTTCATCTGGTGCTTCGCCTTCGTGGAGGCT---CGTTTTAA 7461 Query 22459 AATTATATTATA 22470 ||| ||| ||| Sbjct 7460 GATT-TATAATA 7450 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 |||||| || || || ||| | || ||||| || | || || || || || | | || Sbjct 7923 GCAAATCTTCGTGAAGACTCTCACGGGTAAGACCATTACCCTAGAGGTTGAGTCTTCGGA 7864 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 |||| | ||| | |||| || || |||||||||||||| ||||| || ||||| || Sbjct 7863 TACCATTGACAACGTCAAGGCTAAGATCCAAGACAAGGAGGGCATTCCTCCGGATCAGCA 7804 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 | | || || || ||||| ||| | |||||| || ||| | |||| |||||||| Sbjct 7803 GAGATTGATCTTCGCGGGCAAGCAGCTGGAGGATGGACGAACCCTAGCCGACTACAACAT 7744 Query 22401 TCAAAAAGAATCCAC 22415 || || || || || Sbjct 7743 CCAGAAGGAGTCGAC 7729 >seq44759 Length=4973 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| |||| || || || |||| | ||||| || | || Sbjct 4672 ATGCAAATCTTCGTCAAAACCCTAACTGGGAAGACCATCACGTTGGAAGTTGAGAGTTCC 4731 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||| ||||| ||||| ||||| Sbjct 4732 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAG 4791 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | |||||| ||| ||| | |||| |||||| Sbjct 4792 CAGCGTCTCATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGAACCCTAGCCGACTACAAC 4851 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 4852 ATTCAGAAGGAATCAAC 4868 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | ||||| ||||| |||| ||||| ||||| | Sbjct 4213 AACATGCAGATCTTCGTGAAGACGCTCACCGGCAAAACCATCACCCTTGAGGTGGAGTCT 4272 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| | |||| || || || ||||||||||| |||||||| || Sbjct 4273 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCACCGGAC 4332 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || || || || ||||| || ||| | || | |||| ||| Sbjct 4333 CAGCAGCGTCTCATCTTCGCTGGTAAGCAGTTGGAAGATGGTAGGACGCTGGCCGACTAC 4392 Query 22396 AACATTCAAAAAGAATCCACCATACAT 22422 ||||| ||||| || || ||| | ||| Sbjct 4393 AACATCCAAAAGGAGTCGACCTTGCAT 4419 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| || || || |||| || || || || | | || Sbjct 4444 ATGCAGATCTTCGTCAAGACCCTAACTGGCAAGACCATCACCCTCGAGGTCGAGAGCTCC 4503 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || |||||||||||||| || ||||| || Sbjct 4504 GACACGATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATACCCCCCGACCAG 4563 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || ||||| || || ||| | |||||| ||| ||| | |||| |||||| Sbjct 4564 CAGCGGTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACCCTAGCCGACTACAAC 4623 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 4624 ATCCAGAAGGAGTCTACC 4641 >seq50989 Length=854 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| ||||||| || || |||| ||||| || || | | Sbjct 701 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACCATCACCCTTGAGGTCGAGTCTTCT 642 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || || || |||||||||||||| ||||| || || Sbjct 641 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCACCTGACCAG 582 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || || || || ||| | |||||| ||| ||| | |||| |||||| Sbjct 581 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTAGCCGACTACAAC 522 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 521 ATTCAGAAGGAGTCGAC 505 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| ||||| || | || || || || || | || Sbjct 473 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCC 414 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| |||||||||||||| || || || || Sbjct 413 GATACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAG 354 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | |||||| | || | |||| |||||| Sbjct 353 CAGCGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGTAGGACGCTGGCCGACTACAAC 294 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | ||||| || |||| Sbjct 293 ATCCAGAAGGAGTCTACGCTTCATTTGGTACTGCG 259 >seq87603 Length=1014 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || ||| |||| | || || || | | Sbjct 950 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTTGAGTCTTCT 891 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| ||||| || Sbjct 890 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 831 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| || ||| | |||||| || ||| | |||| |||||| Sbjct 830 CAGCGATTGATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACCCTAGCCGACTACAAC 771 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || || | ||||| || ||||| Sbjct 770 ATTCAGAAGGAGTCGACGCTCCATTTGGTGTTGCG 736 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| || || || || | | Sbjct 722 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTCT 663 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 662 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 603 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||| | |||||| || ||| | | || |||||| Sbjct 602 CAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAAC 543 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | ||| | || | || | |||||||| Sbjct 542 ATTCAGAAGGAGTCCACTCTTCATCTGGTGCTCCGCCTTCGCGGAGG 496 >seq50088 Length=882 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| |||| || || ||| |||| | || || || | | Sbjct 818 ATGCAGATCTTCGTGAAAACCCTAACTGGCAAGACGATCACCTTGGAGGTTGAGTCTTCT 759 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| ||||| || Sbjct 758 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCCGACCAG 699 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| || ||| | |||||| || ||| | |||| |||||| Sbjct 698 CAGCGATTGATCTTTGCCGGGAAGCAGCTCGAGGATGGGCGAACCCTAGCCGACTACAAC 639 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 ||||| || || || || | ||||| || ||||| Sbjct 638 ATTCAGAAGGAGTCGACGCTCCATTTGGTGTTGCG 604 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || |||| || || || || | | Sbjct 590 ATGCAGATTTTCGTCAAGACGCTCACGGGCAAGACAATCACCCTAGAGGTTGAGTCTTCT 531 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || || ||||||||||| ||||| || || || Sbjct 530 GATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAGGGCATTCCTCCTGACCAG 471 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||| | |||||| || ||| | | || |||||| Sbjct 470 CAGCGTTTGATCTTTGCTGGTAAGCAGCTCGAGGATGGTCGTACCTTGGCGGACTACAAC 411 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || ||||| | ||| | || | || | |||||||| Sbjct 410 ATTCAGAAGGAGTCCACTCTTCATCTGGTGCTCCGCCTTCGCGGAGG 364 >seq103297 Length=6425 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || ||||| |||| || || || ||| || | |||||| | ||| || | || Sbjct 4856 ACGGGGAAAACCATCACCCTCGAGGTTGAATCCTCGGATACCATCGACAATGTGAAGGCC 4797 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || ||||| || || | || || || || ||||| Sbjct 4796 AAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGAGGCTCATCTTCGCTGGCAAG 4737 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | |||||| |||||| | |||| |||||||| || || || || ||| Sbjct 4736 CAGCTGGAGGATGGGCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCGACC 4683 >seq85017 Length=850 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| ||||| || | || || || || || | || Sbjct 669 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCC 610 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| |||||||||||||| || || || || Sbjct 609 GATACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAG 550 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | |||||| | || | |||| |||||| Sbjct 549 CAGCGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGTAGGACGCTGGCCGACTACAAC 490 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | ||||| || |||| Sbjct 489 ATCCAGAAGGAGTCTACGCTTCATTTGGTACTGCG 455 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| ||||| || || || ||||| || || || || || Sbjct 813 AAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTCATCTTCGCTGGTAAG 754 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | |||| ||||||||||| || || || || Sbjct 753 CAGCTCGAGGATGGCCGTACCCTAGCCGACTACAACATTCAGAAGGAGTCGAC 701 >seq59239 Length=983 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || |||| ||||| || | || || || || || | || Sbjct 802 ATGCAGATCTTCGTCAAGACCCTAACGGGTAAGACCATTACCCTAGAGGTCGAGTCTTCC 743 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | |||| || ||||| |||||||||||||| || || || || Sbjct 742 GATACCATCGACAACGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCGCCAGACCAG 683 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | |||||| | || | |||| |||||| Sbjct 682 CAGCGGTTGATCTTCGCTGGTAAGCAGCTTGAGGATGGTAGGACGCTGGCCGACTACAAC 623 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 || || || || || || | ||||| || |||| Sbjct 622 ATCCAGAAGGAGTCTACGCTTCATTTGGTACTGCG 588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || |||||||||||||| ||||| || || || ||||| || || || || || Sbjct 946 AAGATCCAGGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTCATCTTCGCTGGTAAG 887 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | |||| ||||||||||| || || || || Sbjct 886 CAGCTCGAGGATGGCCGTACCCTAGCCGACTACAACATTCAGAAGGAGTCGAC 834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419186203817410