Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq44759 114 1e-20 seq50989 107 2e-18 seq87603 100 2e-16 seq50088 100 2e-16 seq85017 96.9 3e-15 seq59239 96.9 3e-15 >seq44759 Length=4973 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || ||||| |||||||| ||| || || | | |||||| | || |||||| Sbjct 4412 GTCGACTCCTTTTGGATGTTGTAGTCGGCCAGCGTCCTACCATCTTCCAACTGCTTACCA 4353 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| |||||||| || ||||| ||||| || Sbjct 4352 GCGAAGATGAGACGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 4293 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | || || || || | ||| | ||||||||||| || || Sbjct 4292 ACGTTGTCGATGGTGTCCGAAGACTCCACCTCAAGGGTGATGGTTTTGCCGGTGAGCGTC 4233 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 4232 TTCACGAAGATCTGCATG 4215 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||| | ||| ||||| || ||||||||||| ||| | || || ||| || || || Sbjct 4875 ATGCAACGTTGATTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGGCCATCCTCCAGCTG 4816 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 ||||| ||| ||||||||||||| || || || || || ||||| ||||| ||||| Sbjct 4815 CTTACCGGCGAAGATGAGACGCTGCTGATCAGGTGGGATACCTTCCTTGTCCTGGATCTT 4756 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 || | | |||| |||||||| || || |||| || | || || || || Sbjct 4755 GGCCTTGACGTTGTCAATGGTGTCGGAACTCTCAACTTCCAACGTGATGGTCTTCCCAGT 4696 Query 114359 CAGAGTTTTTACAAAAATCTGCATG 114383 || ||||| || || || |||||| Sbjct 4695 TAGGGTTTTGACGAAGATTTGCATG 4671 >seq50989 Length=854 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || ||||||||||| ||| | ||||| ||| || || || ||||| Sbjct 504 CGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTACGGCCATCCTCGAGCTGCTTACC 563 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 |||| ||||||||||||| ||||| || || || || || ||||| ||||| || Sbjct 564 AGCGAAGATGAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCCTGGATCTTGGCCTT 623 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| |||||| | || ||||| || | ||| | || || ||||| || || Sbjct 624 GACGTTGTCAATGGTGTCAGAAGACTCGACCTCAAGGGTGATGGTCTTCCCGGTTAGGGT 683 Query 114365 TTTTACAAAAATCTGCATG 114383 ||| || || ||||||||| Sbjct 684 TTTGACGAAGATCTGCATG 702 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| | || ||||| || | | ||| | ||| | ||||| || || || |||||||| Sbjct 13 CAATTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAG 72 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 ||| | || || ||| || || || || || ||| ||||||||||||| ||||| Sbjct 73 TCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCA 132 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 |||||||| ||||| ||||| ||||| || | | |||| || |||| Sbjct 133 GGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTC 192 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| | || || || || ||||| || || ||||||||||| Sbjct 193 TCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 >seq87603 Length=1014 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || || |||||| ||| || || || |||||| Sbjct 526 GTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGCTTACCA 585 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 586 GCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 645 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | || || || || | ||| | || ||||| || || || Sbjct 646 ACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTGAGCGTC 705 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 706 TTGACGAAAATCTGCATG 723 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || ||||| | ||| || || || ||||||||||| ||| | || || ||| Sbjct 738 CAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATC 797 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || |||| | ||||| ||||| || |||||||| || ||||| Sbjct 798 CTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTC 857 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| || | | || | ||||| | || || || |||| ||| | ||| Sbjct 858 CTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGT 917 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || ||||| || || |||||||| Sbjct 918 CTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 >seq50088 Length=882 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || || |||||| ||| || || || |||||| Sbjct 394 GTGGACTCCTTCTGAATGTTGTAGTCCGCCAAGGTACGACCATCCTCGAGCTGCTTACCA 453 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | |||||| ||||| ||||||||||| || ||||| ||||| || Sbjct 454 GCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGGATCTTAGCCTTG 513 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | || || || || | ||| | || ||||| || || || Sbjct 514 ACATTGTCAATGGTATCAGAAGACTCAACCTCTAGGGTGATTGTCTTGCCCGTGAGCGTC 573 Query 114366 TTTACAAAAATCTGCATG 114383 || || |||||||||||| Sbjct 574 TTGACGAAAATCTGCATG 591 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || ||||| | ||| || || || ||||||||||| ||| | || || ||| Sbjct 606 CAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCTAGGGTTCGCCCATC 665 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 || || || || || || |||| | ||||| ||||| || |||||||| || ||||| Sbjct 666 CTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGAATGCCCTCCTTGTC 725 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| || | | || | ||||| | || || || |||| ||| | ||| Sbjct 726 CTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACCTCCAAGGTGATCGT 785 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || ||||| || || |||||||| Sbjct 786 CTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 >seq85017 Length=850 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| | || ||||| || | | ||| | ||| | ||||| || || || |||||||| Sbjct 209 CAATTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAG 268 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 ||| | || || ||| || || || || || ||| ||||||||||||| ||||| Sbjct 269 TCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCA 328 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 |||||||| ||||| ||||| ||||| || | | |||| || |||| Sbjct 329 GGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTC 388 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| | || || || || ||||| || || ||||||||||| Sbjct 389 TCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 >seq59239 Length=983 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| | || ||||| || | | ||| | ||| | ||||| || || || |||||||| Sbjct 342 CAATTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAG 401 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 ||| | || || ||| || || || || || ||| ||||||||||||| ||||| Sbjct 402 TCGGCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCA 461 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 |||||||| ||||| ||||| ||||| || | | |||| || |||| Sbjct 462 GGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTC 521 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || |||| ||| | || || || || ||||| || || ||||||||||| Sbjct 522 TCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419592079225368