Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq102373 104 2e-17 seq1166 100 2e-16 seq17630 95.1 1e-14 seq87603 89.7 4e-13 seq50088 89.7 4e-13 >seq102373 Length=7923 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||||||||| ||| |||||||||||||||||| || || Sbjct 7471 CCTCCACGAAGGCGAAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCT 7530 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || ||||| ||||| |||||||| |||| |||||||||||| || Sbjct 7531 AAGGTACGACCATCCTCCAACTGCTTCCCGGCAAAGATCAAACGCTGCTGATCCGGAGGA 7590 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 7591 ATGCCCTCCTTGTCC 7605 >seq1166 Length=240 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||| ||||||||||||||| ||||||||| ||||||||||| ||| Sbjct 61 CCTCCGCGAAGGCGCAACACCAGATGAAGCGTCGACTCCTTCTGGATGTTGTAATCCGCC 120 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || | | | || ||||||||||| || || || |||| ||||||||||| ||| Sbjct 121 AACGTCCTCCCTTCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCGGGCGGG 180 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| || ||| Sbjct 181 ATGCCCTCCTTATCC 195 >seq17630 Length=252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || |||| ||||||||| || ||| |||||||| ||||||||||| ||| Sbjct 143 CCTCCGCGAAGTCGCAACACCAGATGGAGTGTGGATTCCTTCTGGATGTTGTAATCCGCC 84 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || | | |||| ||||||||||| || || || |||| |||||||||||| || Sbjct 83 AACGTCCTCCCGTCCTCCAATTGCTTACCAGCGAAGATCAATCGCTGCTGATCCGGTGGG 24 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| || ||| Sbjct 23 ATGCCCTCCTTATCC 9 >seq87603 Length=1014 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || |||| ||||| ||| ||||| |||||||||||||||||| || || Sbjct 724 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 783 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | |||| | || || | ||||| |||||||| |||| |||||||| || ||| Sbjct 784 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 843 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||| |||||| || || ||| | | | | |||| ||| || Sbjct 844 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 903 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || ||||| |||||||| ||||| ||||| Sbjct 904 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 950 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||||||||| ||| |||||||||||||||||| || ||| Sbjct 496 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 555 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||| || ||||| |||| |||||||| || || Sbjct 556 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 615 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 616 ATGCCCTCCTTGTCC 630 >seq50088 Length=882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || || || |||| ||||| ||| ||||| |||||||||||||||||| || || Sbjct 592 CCACCCCTAAGACGCAACACCAAATGGAGCGTCGACTCCTTCTGAATGTTGTAGTCGGCT 651 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | |||| | || || | ||||| |||||||| |||| |||||||| || ||| Sbjct 652 AGGGTTCGCCCATCCTCGAGCTGCTTCCCGGCAAAGATCAATCGCTGCTGGTCGGGCGGA 711 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCAT 34080 | || ||| |||||| || || ||| | | | | |||| ||| || Sbjct 712 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCAGAAGACTCAACC 771 Query 34081 TCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | || || || || || ||||| |||||||| ||||| ||||| Sbjct 772 TCCAAGGTGATCGTCTTGCCAGTTAGGGTTTTCACGAAGATCTGCAT 818 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || |||||||||||||| ||| |||||||||||||||||| || ||| Sbjct 364 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 423 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||| || ||||| |||| |||||||| || || Sbjct 424 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 483 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 484 ATGCCCTCCTTGTCC 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396549861183028