Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Selaginella_20kraussiana_20[genbank_20GCA_5F001021135.1_202015-06- 05] 105,914 sequences; 114,502,747 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq85017 131 4e-25 seq59239 131 4e-25 seq50989 131 4e-25 seq77395 109 1e-18 seq44759 104 6e-17 seq87603 98.7 2e-15 seq50088 98.7 2e-15 seq43780 93.3 1e-13 seq103723 86.0 1e-11 >seq85017 Length=850 Score = 131 bits (144), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | || || ||||| | || || || ||||| || ||||| Sbjct 211 ATTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 270 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 ||| || ||||| || || || | || || ||||||||||| |||||||| || | Sbjct 271 GGCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGG 330 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 || |||||||| || |||||||| || || || ||||| || |||| |||| ||| Sbjct 331 AGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTC-- 388 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 389 -TCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 441 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| | ||||| ||| || || ||||| || |||||||| ||||| | || || Sbjct 458 AGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACCATCC 517 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | || || || |||||||||| ||||| || ||||| ||| || || || Sbjct 518 TCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGG---TCTGGCGGGATACCCTCCTTG 574 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||| || || || || ||||| || || | |||| || || || || || || || Sbjct 575 TCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCTAGGGTAATG 634 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||||||||| |||||||| Sbjct 635 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 669 >seq59239 Length=983 Score = 131 bits (144), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | || || ||||| | || || || ||||| || ||||| Sbjct 344 ATTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 403 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 ||| || ||||| || || || | || || ||||||||||| |||||||| || | Sbjct 404 GGCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGG 463 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 || |||||||| || |||||||| || || || ||||| || |||| |||| ||| Sbjct 464 AGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTC-- 521 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 522 -TCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 574 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| | ||||| ||| || || ||||| || |||||||| ||||| | || || Sbjct 591 AGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACCATCC 650 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | || || || |||||||||| ||||| || ||||| ||| || || || Sbjct 651 TCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGG---TCTGGCGGGATACCCTCCTTG 707 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||| || || || || ||||| || || | |||| || || || || || || || Sbjct 708 TCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCTAGGGTAATG 767 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||||||||| |||||||| Sbjct 768 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 802 >seq50989 Length=854 Score = 131 bits (144), Expect = 4e-25 Identities = 170/234 (73%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || || | || || ||||| | || || || ||||| || ||||| Sbjct 15 ATTTCCACCACGCAGACGGAGAACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTC 74 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 ||| || ||||| || || || | || || ||||||||||| |||||||| || | Sbjct 75 GGCAAGGGTGCGGCCATCCTCCAGCTGCTTCCCTGCGAAGATGAGACGCTGCTGGTCAGG 134 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGA 288419 || |||||||| || |||||||| || || || ||||| || |||| |||| ||| Sbjct 135 AGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTGTCAATAGTATCGGAACTC-- 192 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | ||||| ||||| || || |||||||| ||||| |||||||| Sbjct 193 -TCAACCTCCAAGGTGATGGTCTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 245 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||||| || || | ||| || || || || || |||||||| Sbjct 475 CCACCCCTGAGACGCAGTACCAGGTGCAACGTCGACTCCTTCTGAATGTTGTAGTCGGCT 534 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || |||||||| |||||||| || | |||| Sbjct 535 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGTGGG 594 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || ||||| || || | || || || || Sbjct 595 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCAGAAGACTCGACC 654 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||||||||| || || |||||||| |||||||| Sbjct 655 TCAAGGGTGATGGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 701 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| | ||||| ||| || || ||||| || |||||||| ||||| | || || Sbjct 262 AGTACCAAATGAAGCGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTCCTACCATCC 321 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTA 288378 || | || || || |||||||||| ||||| || ||||| ||| || || || Sbjct 322 TCAAGCTGCTTACCAGCGAAGATCAACCGCTGCTGG---TCTGGCGGGATACCCTCCTTG 378 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 ||||| || || || || ||||| || || | |||| || || || || || || || Sbjct 379 TCCTGAATCTTAGCCTTGACGTTGTCGATGGTATCGGAAGACTCGACCTCTAGGGTAATG 438 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||||||||| |||||||| Sbjct 439 GTCTTACCCGTTAGGGTCTTGACGAAGATCTGCAT 473 >seq77395 Length=9811 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| || | || ||| |||||||| || ||||| || Sbjct 1252 CCACCACGGAGGCGGAGCACGAGGTGCAGAGTCGATTCCTTTTGGATGTTGTAGTCAGCC 1311 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||| || | ||| ||| | |||| Sbjct 1312 AGGGTTCGCCCATCCTCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGATCAGGTGGG 1371 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || ||||| ||||| || || || ||||| || || || | ||| || || || Sbjct 1372 ATCCCCTCTTTGTCCTGAATCTTGGCCTTCACATTGTCGATGGTATCCGAGGACTCAACC 1431 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCA 288451 ||||| ||||| ||||||||||||| Sbjct 1432 TCGAGGGTGATGGTCTTCCCGGTCA 1456 >seq44759 Length=4973 Score = 104 bits (114), Expect = 6e-17 Identities = 168/238 (71%), Gaps = 13/238 (5%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || | ||| || || |||| || || || ||||| || |||| Sbjct 4674 CATG-CCACCACGCAGACGAAGCACCAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGT 4616 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || || || | || || || || ||||||| ||||| || | Sbjct 4615 CGGCTAGGGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAACCGCTGCTGG---T 4559 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---C 288415 | ||| || || || || |||||||| || || || ||||| || || | ||| | Sbjct 4558 CGGGGGGTATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCGGAGC 4499 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||| || || || ||||||||||| |||||||| Sbjct 4498 TC---TCGACCTCGAGGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 4444 >seq87603 Length=1014 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || ||||||| ||| || || || || || ||||| || Sbjct 496 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 555 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | || || || || ||||||| |||||| || | || Sbjct 556 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 615 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || || || || || | ||| || || || Sbjct 616 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACC 675 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 676 TCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 722 >seq50088 Length=882 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| || | || || ||||||| ||| || || || || || ||||| || Sbjct 364 CCTCCGCGAAGGCGGAGCACCAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTCCGCC 423 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | || || || || ||||||| |||||| || | || Sbjct 424 AAGGTACGACCATCCTCGAGCTGCTTACCAGCAAAGATCAAACGCTGCTGGTCAGGAGGA 483 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || || || || || | ||| || || || Sbjct 484 ATGCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATGGTATCAGAAGACTCAACC 543 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 544 TCTAGGGTGATTGTCTTGCCCGTGAGCGTCTTGACGAAAATCTGCAT 590 >seq43780 Length=3618 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || |||||||| |||||||| || || || || || || || | |||||| || || Sbjct 1348 ATACCTTCTTTGTCCTGGATCTTGGCCTTGACATTGTCGATGGTATCGCTGCTCTCGACC 1407 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||||||||||||||| || || || ||||| ||||| ||||||||| || Sbjct 1408 TCGAGCGTGATCGTCTTTCCCGTGAGCGTCTTCACGAAGATCTGCATTGTG 1458 >seq103723 Length=13020 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || |||||||| || || ||||| || || || | ||| || || || Sbjct 116 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATTGTATCACTGCTCTCGACC 175 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||||||||||||| || || || ||||| ||||| |||||||| Sbjct 176 TCGAGCGTGATCGTCTTTCCCGTGAGCGTCTTCACGAAGATCTGCAT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178053581699692